Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops5g01100 ATGGATACCAAAGGGAGATTAATTGCAGGGTCTCATAACAGGAATGAGTTTGTTCTTATCAATGCTGATGAGACTGCAAGAGTGACCGCTGTTACAGAATTAAGTGGACAAATTTGCCAGATCTGTGGGGATGAGTTGGAGGTTACAGTGAATGGAGAGCCATTTGTTGCTTGCAATGAATGCGCATTCCCTGTGTGCAGAACTTGCTATGAGTATGAAAGAAGAGAGGGAAACAAAGTTTGCCCTCAGTGTAAAACCAGATACAAGCGCCTCAAAGGTAGTCCTAGAGTTGAGGGTGATGATGAAGAGGATGATATTGATGATTTGGAAAATGAGTTTGATACTGGAAGCAATATTAGGCGAGATCCTCATCACATTAATGAGGCCATGCTCTCTGCTCGCCTTAATATTGGCCGTGGTTCCCAGTTGAATGGTTCTGTGATCAACACACCATCAGAGTTTGATGCAGCCTCTGTGGCTGCTGATATCCCTCTCCTTACATATGGTCAAGAGGATGTGGGCATTGCTGCTGATAAACATGCTCTCATTATTCCTCCATTTATGGCAAGAGGAAAACGGGTTCATCCTATGCCTTTTCCTGATTCATCTGTACCAGTTCAACCTAGACCTATGGATCCTAAAAAAGATATAGCAGTTTATGGATATGGGAGTGTTGCGTGGAAGGAACGGATGGAGGATTGGAAAAAAAAGCAAGGTGAAAAACTTCAGGTGGTTAAGCATGAAGGGGGTAAAGATTTTGATGACATGGATGATCCTGACTTACCAAAAATGGATGAAGGCAGACAGCCACTTTGGAGAAAGTTGCCAGTTAGTTCAAGCAGGATAAATCCATACAGAATTATAATAGTACTCCGGATTGCTATTCTTTGCCTCTTTTTTCATTATAGAATTCTCCATCCAGTCAATAATGCATATGCATTGTGGCTGACATCAGTAATTTGTGAAATCTGGTTTGCTGTATCATGGATTTTGGATCAGTTTCCAAAATGGTGCCCAGTTGAGCGAGAAACATACCTTGATCGATTATCATTAAGGTATGAGAAAGAAGGAAAACCATCTGAATTAGCTGATATAGACATATTTGTTAGTACAGTGGATCCTCTGAAAGAACCTCCACTTATAACAGCAAACACAGTTCTGTCCATCCTTGCTGTAGATTATCCAGTGGACAAAGTTGCATGCTATGTCTCAGATGATGGTGCTGCTATGCTTACATTTGAAGCCCTTTCAGAGACATCTGAGTTTGCAAGGAAATGGGTTCCATTCTGCAAGAAGTTCAGCATTGAACCACGGGCTCCTGAATGGTATTTTGCTCAGAAGGTTGACTATCTGAAAGATAAAGTGGATGCAGCATTTATCAGAGAGCGACGTGCTATTAAGAGGGAGTATGAAGAGTTCAAAGTTCGGATTAATGCATTGGTTGCAATGGCACAGAAGGTGCCTGAGGATGGTTGGACAATGCAGGATGGGACTCCATGGCCTGGGAACAATGTCAGAGATCATCCTGGAATGATACAGGTTTTCCTTGGTCAAAATGGTGTTCGTGATATGGAAGGAAATGAATTACCACGTCTCGTCTATGTGTCTCGTGAGAAAAGACCTGGATATGAGCACCACAAAAAAGCTGGAGCTATGAATGCCTTGGTACGAGTCTCAGCTGTAATCACAAATGCTCCTTATCTACTGAATGTTGATTGTGATCACTACATTAACAACAGTAAGGCCCTTCGTGAAGCCATGTGCTTCATGATGGATCCTACATCAGGGAAAAAGATATGCTATGTACAATTTCCTCAAAGATTTGATGGGATTGATCGTCATGACAGATACTCAAATCGCAATGTTGTATTCTTTGATATCAATATGAAAGGTTTAGATGGAATCCAAGGACCAATATATGTGGGAACTGGGTGTGTCTTTAGGAGGCAGGCACTTTATGGATATGATGCCCCTTCTACAAAGAAACCACCAAGGAAGACCTGTAACTGTTGGCCTAAATGGTGCTGCTGCCTGTGTAGTGGATCTAGGAAGAAAAAGAATAAAACAAAGTCAAGTATGAAAAAGATAAAGAATACAAAGCAAATGCAGGCACTAGAAAATATTGAAGAGGGAATTGAAGGAATAGACAATGAGAAGTCATCACTAATGTCTCAGCTAAAATTTGAGAAGAAATTTGGGCAATCAGCTGTTTTCATAGCTTCCACACTCATGGAAGATGGGGGCATTCCAAAAGCAGCTTCTTCTGCAACACTCTTGAAAGAAGCAATCCATGTAATTAGTTGTGGTTATGAAGATAAGACAGAGTGGGGGAAAGAGGTTGGGTGGATATATGGTTCTGTCACAGAAGATATTTTAACAGGTTTCAAGATGCACTGTCATGGTTGGAGATCAGTGTACTGCATGCCAAAAAGGCCTGCTTTTAAGGGTTCAGCTCCTATAAATCTCTCAGATCGTCTGCATCAAGTTCTTCGGTGGGCACTTGGATCTGTTGAGATCCTTTTGAGTAGGCATTGTCCTATATGGTATGGTTATGGTTGTGGCTTGAAATGGCTGGAACGATTCTCTTACATAAACTCAGTTGTTTATCCTCTGACCTCACTTCCCTTAATCACCTACTGCACCTTGCCAGCTGTTTGTCTGCTTACTGGGCAGTTCATAGTCCCTGAGATTAGCAACTATGCCAGTATCATTTTCATGGCCCTCTTCATCTCTATAGCTGCAACTGGCATCCTGGAAATGCAGTGGGGAGGTGTTGGTATACATGACTGGTGGAGGAATGAGCAGTTCTGGGTTATTGGTGGTGCATCTTCACATCTGTTTGCTCTCTTTCAGGGTTTGCTTAAAGTTCTGGCAGGAGTTAACACAAACTTCACTGTCACTTCCAAAGCTGCAGATGATGGAGATTTTGCTGAACTCTACATCTTCAAGTGGACATCTTTGTTGATTCCTCCTTTGACCTTGCTAATCATAAACATAATTGGAGTCATTGTTGGTGTTTCAGATGCTATAAATAATGGCTATGATTCATGGGGTCCTCTATTTGGTAAACTATTCTTTGCCCTTTGGGTCATTCTCCATCTTTACCCATTCCTCAAGGGAGTTATGGGAAAACAAGAAGGTGTTCCTACCATCATTTTGGTCTGGGCTATTCTTCTGGCTTCAATCTTCTCACTTCTATGGGTGAGAATCAACCCATTTTTGGCCAAAAATGACATTGTGTTGGAAATTTGTGGATTGAATTGTGACTAA 3270 0.4165 MDTKGRLIAGSHNRNEFVLINADETARVTAVTELSGQICQICGDELEVTVNGEPFVACNECAFPVCRTCYEYERREGNKVCPQCKTRYKRLKGSPRVEGDDEEDDIDDLENEFDTGSNIRRDPHHINEAMLSARLNIGRGSQLNGSVINTPSEFDAASVAADIPLLTYGQEDVGIAADKHALIIPPFMARGKRVHPMPFPDSSVPVQPRPMDPKKDIAVYGYGSVAWKERMEDWKKKQGEKLQVVKHEGGKDFDDMDDPDLPKMDEGRQPLWRKLPVSSSRINPYRIIIVLRIAILCLFFHYRILHPVNNAYALWLTSVICEIWFAVSWILDQFPKWCPVERETYLDRLSLRYEKEGKPSELADIDIFVSTVDPLKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDAAFIRERRAIKREYEEFKVRINALVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDMEGNELPRLVYVSREKRPGYEHHKKAGAMNALVRVSAVITNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPSTKKPPRKTCNCWPKWCCCLCSGSRKKKNKTKSSMKKIKNTKQMQALENIEEGIEGIDNEKSSLMSQLKFEKKFGQSAVFIASTLMEDGGIPKAASSATLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERFSYINSVVYPLTSLPLITYCTLPAVCLLTGQFIVPEISNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGDFAELYIFKWTSLLIPPLTLLIINIIGVIVGVSDAINNGYDSWGPLFGKLFFALWVILHLYPFLKGVMGKQEGVPTIILVWAILLASIFSLLWVRINPFLAKNDIVLEICGLNCD* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops5g01100 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Rops5g01100 1089 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 507 661 IPR029044 -
Rops5g01100 1089 FunFam Cellulose synthase 21 112 - -
Rops5g01100 1089 FunFam Cellulose synthase 482 656 - -
Rops5g01100 1089 Pfam Zinc-binding RING-finger 31 105 IPR027934 -
Rops5g01100 1089 Pfam Cellulose synthase 365 1078 IPR005150 GO:0016020|GO:0016760|GO:0030244
Rops5g01100 1089 CDD mRING-HC-C4C4_CesA 37 87 - -
Rops5g01100 1089 SUPERFAMILY RING/U-box 27 107 - -
Rops5g01100 1089 SUPERFAMILY Nucleotide-diphospho-sugar transferases 379 884 IPR029044 -
Rops5g01100 1089 Coils Coil 705 725 - -
Rops5g01100 1089 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Rops5g01100 1089 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 269 1054 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops5g01100 Rops-Chr5 22621046 22628027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops5g01100 1 1088 Glycosyltransferase AT5G64740 78.650 0.0 1764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops5g01100 K10999 - gmx:100795809 1999.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g01100 5 22621046 22628027 Rops5g01100 5 22621046 22628027 ECH
Rops5g01100 5 22621046 22628027 Rops6g02582 6 46481594 46487828 PCT