Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g02365 ATGGACACCAAAGGGAGACTAGTTGCTGGGTCTCATAACAGGAATGAGTTTGTTCTTATCAATGCTGATGAGACTGCAAGAGTGACTGCTGTCACAGAATTAAGCGACCATTGCTATGAGTACGAAAGAAGAGAGGGTAACCAAGTTTGTCCTCAGTGTAAAACCAGATACAAGCGCATCAAAGGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATACTGATGATTTGGAAAGTGAGTTTGATATTGGAAGCGTGTTCTCTGCTCGCCTTAACTATGGTTCACAGGTGAATGGTTCAGTGATCCACACACCATCAGAGTTTGATGCAGCTTCTGTGGCTTCTGAGATCCCTCTCCTGACATATGGTCAAGAGGATGTTGGCATTTCTGCTGATAAACATGCTCTTATTCTTCCTCCATTCACGGCTCGTGGGAAACGGGTTCATCCTATGCCTCTTCCTTATTCATCTCTACCTGTTCAACCAAGACCTATGGATCCTAAAAGGGATATTGCTGTTTATGGATATGGAAGTGTTGCATGGAAGGAACGGATGGAGGATTGGAAGAAAAAGCAAAGTGAAAAACTTCAGGTGGTTAGGCATGAAGGGGGGAAGGATAGTGATGAGCTGGATGATCCTGACTTACCAAAAATGGATGAAGGCAGACAGCCACTTTGGAGAAAGTTGCCAATTAGTTCAAGCAGGATAAATCCATACAGAATCATAATAGTACTCCGGATTGCCATTCTTGGCCTCTTTTTTCATTATAGAATCCTCCATCCAGTCAATGATGCATATGCATTGTGGCTCACATCAGTAATATGTGAAATCTGGTTTGCTGTGTCATGGATTTTTGATCAGTTCCCAAAATGGTCTCCAATTCTGCGAGAAACATACCTTGATCGTTTATCTCTAAGGTATGAGAAAGAAGGAAAGCCATCTCAGTTAGCTGATATAGACGTGTTCGTTAGTACAGTGGACCCTATGAAGGAACCTCCACTCATTACTGCAAACACAGTTCTGTCTATCCTTGCTGTGGATTATCCAGTGGACAAGGTTGCATGCTATGTCTCGGATGATGGTGCTGCCATGCTTACATTTGAAGCACTCTCTGAAACTTCTGAGTTTGCAAGGAAATGGGTTCCATTCTGCAAGAAGTTCAGCATTGAACCACGGGCTCCTGAATGGTATTTTGCTCAGAAGGTTGACTACTTGAAGGATAAAGTGGATGCCACATTTATAAGAGAACGCCGTGCCATTAAGAGGGAGTATGAAGAGTTCAAAGTGAGGATTAATGCATTGGTGGCTTTGGCACAGAAGGTTCCTGAGGATGGTTGGACAATGCAGGATGGTACTCCATGGCCTGGGAACAATGTCAGAGATCATCCCGGAATGATACAAGTTTTCCTTGGTCAAAATGGTGTTCGTGACATTGAAGGAAATGAATTACCTCGTCTTGTCTATGTGTCTCGTGAGAAAAGACCTGGATATGATCACCACAAAAAAGCTGGAGCTATGAATGCTTTGGTGAGAGTCTCGGCAATAATCACCAATGCTCCTTATGTACTGAATGTTGATTGTGATCACTACATAAATAACAGTAAGGCCCTTCGTGAAGCCATGTGCTTCATGATGGATCCTACATCAGGGAAAAAGATATGCTATGTACAGTTTCCTCAAAGATTTGATGGGATTGATCGTAATGATAGATACTCGAATCGCAATGTTGTATTCTTTGATATCAATATGAAAGGTTTAGATGGCATCCAAGGACCAATATATGTGGGAACTGGGTGTGTCTTCAGGAGGCAGGCATTTTATGGATATGATGCCCCTACTTCGAAGAAAGCACCAAGGAAGACATGTAACTGTTGGCCTAAATGGTGCTGCTGTCTGTGTTGTTGTGGATCTAGGAAGAAAAACATTAAAGCAAAGTCAAGCATGAAAAAGAAGATAAAGACTAAGGATGATTTAAAGCAAATGCATGCACTAGAAAATATTGAAGAGGGAATTGAAGGAATTGACAATGAGAAGTCATCACTAATGTCTCAACAAAAGTTTGAGAAGAAGTTTGGGCAATCATCTGTTTTCATAGCTTCAACACTCTTGGAAGATGGGGGTGTTCCAAAAGCAGCAAGTTCTGCAACACTCTTGAAAGAGGCCATCCATGTAATTAGTTGTGGTTATGAAGATAAGACAGAATGGGGGAAAGAGGTTGGGTGGATATATGGCTCAGTTACAGAAGATATTTTAACAGGTTTCAAGATGCATTGTCATGGTTGGAGATCTGTATACTGCATGCCAAAAAGGCCTGCTTTTAAGGGTTCAGCTCCTATAAATCTCTCGGATCGTCTGCATCAAGTTCTTCGGTGGGCACTTGGATCTGTCGAGATCTTTTTCAGTAAGCATTGTCCTATATGGTATGGTTATGGTGGTGGCTTGAAATCGCTGGAACGATTCTCTTACATAAACTCAGTTGTTTATCCTCTGACTTCACTTCCCTTAATTGCCTACTGCACATTGCCAGCTGTCTGTCTGCTCACTGGGAAGTTCATTGTCCCTGAGATAAGTAACTATGCCAGTATCATTTTCATGGCCCTCTTCATCTCTATAGCTGCAACTGGCATCCTGGAAATGCAGTGGGGAGGTGTTGGTATACATGACTGGTGGAGGAATGAGCAGTTCTGGGTTATTGGTGGTGCCTCCTCACATCTGTTTGCTCTCTTTCAGGGTTTGCTCAAAGTTCTGGCAGGAGTTAACACAAACTTCACAGTCACATCCAAGGCAGCAGATGATGGAGAGTTTGCTGATCTCTACATCTTCAAGTGGACATCCTTGTTGATCCCTCCCTTGACCCTACTAATCATAAACATAATTGGAGTCATTGTTGGTGTCTCAGATGCTATAAACAATGGCTATGATTCATGGGGTCCTTTATTTGGCAAGCTATTTTTTGCCCTTTGGGTCATTGTCCACCTTTACCCTTTCCTAAAGGGAGTCATGGGAAAGCAGGAAGGTGTTCCTACCATCATTTTGGTCTGGGCCATTCTTCTGGCTTCAATCTTAACACTACTTTGGGTGAGAATCAACCCATTTTTGGCCAAAAATGATGTTGTGTTGGAAATTTGTGGATTGAATTGTGACTAA 3150 0.4248 MDTKGRLVAGSHNRNEFVLINADETARVTAVTELSDHCYEYERREGNQVCPQCKTRYKRIKGSPRVEGDEEEDDTDDLESEFDIGSVFSARLNYGSQVNGSVIHTPSEFDAASVASEIPLLTYGQEDVGISADKHALILPPFTARGKRVHPMPLPYSSLPVQPRPMDPKRDIAVYGYGSVAWKERMEDWKKKQSEKLQVVRHEGGKDSDELDDPDLPKMDEGRQPLWRKLPISSSRINPYRIIIVLRIAILGLFFHYRILHPVNDAYALWLTSVICEIWFAVSWIFDQFPKWSPILRETYLDRLSLRYEKEGKPSQLADIDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDATFIRERRAIKREYEEFKVRINALVALAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNELPRLVYVSREKRPGYDHHKKAGAMNALVRVSAIITNAPYVLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRNDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAFYGYDAPTSKKAPRKTCNCWPKWCCCLCCCGSRKKNIKAKSSMKKKIKTKDDLKQMHALENIEEGIEGIDNEKSSLMSQQKFEKKFGQSSVFIASTLLEDGGVPKAASSATLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSKHCPIWYGYGGGLKSLERFSYINSVVYPLTSLPLIAYCTLPAVCLLTGKFIVPEISNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFADLYIFKWTSLLIPPLTLLIINIIGVIVGVSDAINNGYDSWGPLFGKLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWAILLASILTLLWVRINPFLAKNDVVLEICGLNCD 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g02365 1049 Pfam Cellulose synthase 320 1039 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pumo6g02365 1049 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 224 1010 - -
Pumo6g02365 1049 FunFam Cellulose synthase 437 611 - -
Pumo6g02365 1049 SUPERFAMILY Nucleotide-diphospho-sugar transferases 333 840 IPR029044 -
Pumo6g02365 1049 SUPERFAMILY RING/U-box 37 76 - -
Pumo6g02365 1049 Coils Coil 665 685 - -
Pumo6g02365 1049 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 466 614 IPR029044 -
Pumo6g02365 1049 MobiDBLite consensus disorder prediction 198 222 - -
Pumo6g02365 1049 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 81 IPR013083 -
Pumo6g02365 1049 Pfam Zinc-binding RING-finger 35 74 IPR027934 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g02365 Pumo-Chr6 46800654 46808962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g02365 1 1048 Glycosyltransferase AT5G64740 76.243 0.0 1683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g02365 K10999 - gmx:100795809 1983.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g02365 6 46800654 46808962 Pumo6g02365 6 46800654 46808962 ECH
Pumo6g02365 6 46800654 46808962 Pumo3g01142 3 18554911 18561366 PCT