Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0733 ATGGACACCAATGGGAGACTAATTGCAGGTTCACACAACAGGAATGAGTTTGTTCTTATCAATGCTGATGAAACTGCAAGAGTCAATGCTGTTACAGAATTGAGTGGGCAAATTTGCCAGATCTGTGGTGATGAGATAGAGGTGACAGTGGATGGGGAACCATTTGTTGCTTGCAATGAATGTGCGTTCCCCGTGTGCAGACCTTGCTATGAGTATGAAAGAAGAGAGGGGAACAAAGTTTGCCCTCAGTGTAAAACCAAATACAAGCGCATAAAGGGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGGTGTTGATGATTTGGAAAATGAGTTTGACATTGGAAGCAATATCAGGTGCGACCATCATCACATTGCTGAGGCCGTGCTCTCTGCTCGCCTCAACACTGGTCGTAGTTCACAAATGGATGCTTCAAGAGTCACTACGCCATCGGAGTTTGATGCGGTTTCTGTGGCTGCTGATATTCCTCTCCTGACATATGATAACGAGGATGTTGGCATTTCTGCTGATAAACATGCGGTCATTATTCCTCCATTTGTGTCTCGTGGGAGACGGGTTCATCCTATGCATTTTCCTGATTCAACTGTGCCGGTTCAACCCAGAGCTATGGATCCTAAAAAAGATTTAGCTGTTTATGGATATGGAAGTGTTGCATGGAAGGAACGAATGGAGGAATGGAAGAAAAAGCAGAATGAAAAACTTGAGGAGGTTAAGGACAAAGGGGGTAAGAACTGTGAAATAAATGGTGACCAGATTGATGACCCTGATTTGCCAAAAATGGATGAAGGGAGACAGCCACTGTGGAGGAAGCTTCCTATTAGTCCAAGCAAGATAAATCCATATCGAATTATAATAGTGCTCCGAATTGCTGTTCTTGGCCTCTTTTTTCATTATAGAATCCTCCATCCAGTCAACGATGCATACGCATTGTGGCTTACATCAGTAATATGTGAAATCTGGTTTGCTGTGTCATGGATTCTGGATCAGTTTCCAAAATGGTGCCCAGTTGAGCGAGAAACGTACCTTGATCGTTTGTCACTAAGGTATGAGAAAGAAGGAAAGCCATCTGAATTAGCTGATATAGACATATTTGTTAGCACAGTAGATCCTTTGAAAGAGCCTCCACTTATAACTGCAAACACGGTTCTGTCCATCCTAGCTGTAGATTATCCAGTGGGAAAAGTTTCATGCTATGTGTCCGATGATGGTGCAGCTATGCTCACATTTGAAGCCCTTTCGGAGACATCCGAGTTTGCAAGAAAGTGGGTTCCATTCTGTAAGAAGTTTAGCATTGAGCCACGGGCTCCTGAATGGTATTTTGCTCACACGGTTGACTATCTGAAGCACAAAGTGGATGCATCATTCATAAGGGAGCGCCGCGCTATCAAGAGAGAATATGAAGAGTTCAAAGTGCGGATTAATGCACTGGTTGCAACGGCACAGAAGGTTCCTGAGGATGGCTGGACAATGCAGGATGGGACTCCATGGCCCGGAAACAATGTCCGAGATCATCCTGGAATGATTCAGGTTTTCCTTGGCCAAAATGGTGTTCATGATGTTGAGGGGAATGAGTTACCTCGTCTTGTCTACGTGTCTCGAGAGAAAAGGCCTGGATTTGAACACCACAAAAAAGCTGGTGCTATGAATTCCTTGGTGCGAGTCTCCGCAGTGATATCAAATGCTCCTTACCTACTTAATGTCGATTGTGATCACTACATAAACAACAGTAAGGCTCTTCGTGAAGCCATGTGTTTCATGATGGATCCTACATCAGGGAAAAAAATATGCTATGTTCAGTTTCCTCAAAGATTTGATGGCATTGATCGTCATGATAGATACTCAAATCGCAATGTTGTGTTCTTTGATATCAACATGAAAGGTTTAGATGGCATCCAAGGACCAATATATGTAGGAACGGGGTGTGTCTTCAGGCGGCAGGCACTCTATGGATATGATGCCCCTGCTAAGAAGAAACCGCCAACAAAGACATGTAACTGTTTTCCCAAATGGTGCTGCCTGTGTAGTGGATCTCGGAAGAAGAATAGGAATGTGAAAATGAGTCCGAGAAAGAAGATAAAGAATAAGGATGTTACAAAGCAAATACATGCACTAGAAAGTATTGAAGAGGGAATTGAAGGAATCGACAGTGAGAAGTCATCACTAATGTCACAGCTAAAATTTGAGAAGAAATTCGGGCAATCAGCTGTTTTCATTGCTTCAACTCTTATGGAAGATGGGGGCTTTCTGAAGGGAGCATCTTCTGCATCACTCTTGAAAGAAGCCATCCATGTTATTAGTTGTGGATATGAAGATAAGACAGAGTGGGGGAAAGAGGTTGGATGGATATATGGTTCTGTCACAGAGGATATTTTAACAGGTTTCAAGATGCACTGCCACGGTTGGCGATCCGTGTACTGCATGCCTAAAAGGCCTGCTTTCAAGGGTTCAGCTCCCATAAATCTCTCGGATCGTCTGAACCAAGTTCTCCGGTGGGCACTTGGATCGGTTGAGATCCTGCTGAGCAGGCATTGTCCTATATGGTATGGATACGGCTGTGGCTTAAAATGGTTGGAGCGCTTATCTTACATAAACTCAGTGGTTTATCCTTTGACATCAATTCCCTTAATTGCCTATTGTACCTTGCCTGCTGTCTGTCTTCTCACCGGGAAGTTCATAGTACCTGAGATTAGCAACTATGCTAGCATCATTTTCATGGCACTCTTCATCTTTATAGCTGCAACTAGCATCCTGGAAATGCAATGGGGTGGTGTTGGCATCCATGACTGGTGGAGGAATGAACAATTCTGGGTCATCGGTGGCGCCTCCTCGCATCTCTTTGCTCTCTTTCAAGGATTGCTTAAGGTTCTTGCAGGAGTTAACACAAATTTCACTGTCACATCCAAGGCTGCAGATGATGGAGAATTTGCTGAGCTCTACCTCTTCAAGTGGACATCATTGTTGATCCCTCCTTTGACCTTGCTTATCATAAACATAATTGGAGTTATTGTAGGTGTTTCAGATGCAATAAACAATGGCTATGAGACATGGGGTCCTCTGTTTGGTAAGCTTTTCTTTGCTCTATGGGTCATTGTCCATCTATACCCTTTCCTCAAGGGAGTTATGGGAAAACATGAAGGTGCTCCTACCATAATTTTGGTCTGGTCTATTCTTCTTGCTTCAATCTTCTCACTTCTTTGGGTGCGGATCAACCCGTTTTTGGCTAAAGGTGACATTGTGTTGGAACTTTGTGGGTTGAATTGTGACTAG 3291 0.4366 MDTNGRLIAGSHNRNEFVLINADETARVNAVTELSGQICQICGDEIEVTVDGEPFVACNECAFPVCRPCYEYERREGNKVCPQCKTKYKRIKGSPRVEGDEEEDGVDDLENEFDIGSNIRCDHHHIAEAVLSARLNTGRSSQMDASRVTTPSEFDAVSVAADIPLLTYDNEDVGISADKHAVIIPPFVSRGRRVHPMHFPDSTVPVQPRAMDPKKDLAVYGYGSVAWKERMEEWKKKQNEKLEEVKDKGGKNCEINGDQIDDPDLPKMDEGRQPLWRKLPISPSKINPYRIIIVLRIAVLGLFFHYRILHPVNDAYALWLTSVICEIWFAVSWILDQFPKWCPVERETYLDRLSLRYEKEGKPSELADIDIFVSTVDPLKEPPLITANTVLSILAVDYPVGKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAHTVDYLKHKVDASFIRERRAIKREYEEFKVRINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVHDVEGNELPRLVYVSREKRPGFEHHKKAGAMNSLVRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPAKKKPPTKTCNCFPKWCCLCSGSRKKNRNVKMSPRKKIKNKDVTKQIHALESIEEGIEGIDSEKSSLMSQLKFEKKFGQSAVFIASTLMEDGGFLKGASSASLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGCGLKWLERLSYINSVVYPLTSIPLIAYCTLPAVCLLTGKFIVPEISNYASIIFMALFIFIAATSILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFAELYLFKWTSLLIPPLTLLIINIIGVIVGVSDAINNGYETWGPLFGKLFFALWVIVHLYPFLKGVMGKHEGAPTIILVWSILLASIFSLLWVRINPFLAKGDIVLELCGLNCD* 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0733 1096 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Lja5g0733 1096 Coils Coil 228 248 - -
Lja5g0733 1096 PANTHER CELLULOSE SYNTHASE 1 1095 - -
Lja5g0733 1096 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Lja5g0733 1096 Pfam Zinc-binding RING-finger 31 105 IPR027934 -
Lja5g0733 1096 MobiDBLite consensus disorder prediction 243 267 - -
Lja5g0733 1096 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 518 661 IPR029044 -
Lja5g0733 1096 Pfam Cellulose synthase 369 1085 IPR005150 GO:0016020|GO:0016760|GO:0030244
Lja5g0733 1096 SUPERFAMILY RING/U-box 27 107 - -
Lja5g0733 1096 SUPERFAMILY Nucleotide-diphospho-sugar transferases 383 907 IPR029044 -
Lja5g0733 1096 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Lja5g0733 1096 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1095 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0733 Lja-Chr5 6727798 6733569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0733 1 1095 Glycosyltransferase AT5G64740 77.596 0.0 1755
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0733 K10999 - pop:7492474 1934.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0733 5 6727798 6733569 Lja5g0733 5 6727798 6733569 ECH