Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu8g02641 ATGGACGAAGGCAGACAACCACTTTGGAGAAAGCTGCCAATTAGTTCAAGCAGGATAAATCCATACAGAATCATAATAGTACTCCGGATTGCCATTCTTGGCCTCTTTTTCCATTATAGAATTCTCCATCCTGTCAATGATGCATATGCATTGTGGCTCACATCAGTAATCTGTGAAATCTGGTTTGCTGTGTCATGGATTTTTGATCAGTTCCCAAAATGGAGCCCAATTATGAGGGAAACATACCTTGATCGTTTATCTCTGAGGTACGAGAAAGAAGGAAAACCATCTCAGTTAGCAGATATAGATGTGTTTGTCAGTACAGTGGATCCTATGAAAGAGCCTCCACTTATAACTGCAAACACAGTTCTGTCCATCCTTGCTGTGGATTATCCAGTGGAAAAGGTTGCATGTTATGTCTCTGATGATGGTGCTGCAATGCTTACATTTGAAGCACTCTCCGAGACTTCTGAGTTTGCAAGAAAATGGGTTCCGTTCTGCAAGAAGTTCAGCATTGAACCACGGGCTCCAGAATGGTATTTTGCACAGAAGGTTGACTACTTGAAGGATAAAGTAGATGCAGCATTTATTAGAGAACGTCGTGCCATTAAGAGGGAGTATGAAGAGTTCAAAGTGAGGATTAATGCATTGGTGGCAATGGCGCAGAAGGTTCCTGAGGATGGTTGGACAATGCAGGATGGTACTCCATGGCCTGGGAACAATGTCAGAGATCATCCTGGAATGATACAAGTTTTCCTGGGACAAAATGGTGTTCGTGACATTGAAGGCAATGAATTACCTCGACTTGTGTACGTGTCCCGTGAGAAAAGACCTGGATATGAGCACCACAAAAAGGCTGGAGCTATGAATGCTTTGGTGAGAGTCTCAGCAATAATCACAAATGCTCCTTACCTACTGAATGTTGATTGTGATCACTACATAAATAACAGTAAGGCCCTTCGTGAAGCCATGTGCTTCATGATGGATCCTACATCAGGGAAAAAAATATGCTATGTACAGTTTCCCCAAAGATTTGATGGGATTGATCGAAATGATAGATACTCAAATCGCAATGTTGTATTCTTTGATGACCTATATATGTGGGAACTGGGTGTGTCTTCAGGAGGCAGGCATTTTATGGATATGATGCCCCTGCTACGAGGAAACCACCAAGGAAGACATGTAACTGTTGGCCTAAATGGTGCTGCTGTCTGTGTGGATCTAGGAAGAAAAAGATTAAATCAAAGTCAACAACTAACTAGTTTTGTAATGGCATTTGGTGGTCCTCTTGAAACCCTTATCACAGGAATTGACAACGAGAAGTCCTTATTAATGTCTCAACAAAAGTTTGAGAAGAAATATGGGCAATCATCTGTTTTCATAGCTTCAACACTCATGGAAGATGGGGGTCTTCCCAAAGCAGCAAGTTCTGCCACACTATTGAAAGAAGCCATCCATGTAATTAGTTGTGGTTATGAGGATAAGACAGAATGGGGGAAAGAGGTTGGGTGGATATATGGCTCCGTTACAGAAGATATTTTAACAGGTTTCAAGATGCATTGCCATGGTTGGAGATCTGTTTACTGCATGCCCAAAAGGCCTGCTTTCAAGGGTTCAGCTCCTATAAATCTCTCAGATCGTCTGCATCAAGTTCTTCGATGGGCTCTTGGATCTGTTGAGATCTTTTTCAGTAGGCATTGTCCTATATGGTATGGTTATGGTGGTGGCTTGAAGTCGCTGGAACGATTCTCTTACATAAACTCGGTTGTTTATCCTCTGACTTCAATTCCCTTAATTGCCTACTGTGCATTACCAGCTGTCTGTCTGCTCACTGGGAAATTCATTGTCCCTGAGATAAGTAATTATGCCAGTATCATTTTCATGGCTCTGTTCATCTCTATAGCTGCAACTGGCATCCTGGAAATGCAGTGGGGAGGTGTTGGTATACATGACTGGTGGAGGAATGAGCAGTTCTGGGTTATTGGTGGAGCCTCCTCACATCTGTTTGCTCTCGTTCAGGGTTTGCTCAAAGTTCTTGCAGGAGTTAACACAAACTTCACTGTCACATCCAAAGCTGCAGATGATGGAGACTTTGCTGAACTCTACATCTTCAAATGGACATCCTTGTTGATCCCTCCCTTGACCCTACTGATCATAAACATAATTGGAGTCATTGTTGGTGTGTCAGATGCTATAAACAATGGCTATGATTCATGGGGTCCTTTGTTTGGAAGGCTATTTTTTGCCCTTTGGGTCATTGTCCATCTTTATCCTTTCCTCAAGGGTGTCATGGGAAAACAGGAAGGTGTTCCTACCATCATCTTGGTCTGGGCCATTCTTCTGGCTTCGATCTTAACACTGCTTTGGGTGAGGATCAACCCATTTTTGGCAAAAAATGATATTGTGCTTGAAATTTGTGGGTTGAAGTGTGACTGA 2436 0.4257 MDEGRQPLWRKLPISSSRINPYRIIIVLRIAILGLFFHYRILHPVNDAYALWLTSVICEIWFAVSWIFDQFPKWSPIMRETYLDRLSLRYEKEGKPSQLADIDVFVSTVDPMKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDAAFIRERRAIKREYEEFKVRINALVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNELPRLVYVSREKRPGYEHHKKAGAMNALVRVSAIITNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRNDRYSNRNVVFFDDLYMWELGVSSGGRHFMDMMPLLRGNHQGRHVTVGLNGAAVCVDLGRKRLNQSQQLTSFVMAFGGPLETLITGIDNEKSLLMSQQKFEKKYGQSSVFIASTLMEDGGLPKAASSATLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPIWYGYGGGLKSLERFSYINSVVYPLTSIPLIAYCALPAVCLLTGKFIVPEISNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALVQGLLKVLAGVNTNFTVTSKAADDGDFAELYIFKWTSLLIPPLTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWAILLASILTLLWVRINPFLAKNDIVLEICGLKCD 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu8g02641 811 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 247 377 IPR029044 -
Vimu8g02641 811 SUPERFAMILY Nucleotide-diphospho-sugar transferases 115 611 IPR029044 -
Vimu8g02641 811 Pfam Cellulose synthase 102 800 IPR005150 GO:0016020|GO:0016760|GO:0030244
Vimu8g02641 811 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 6 772 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu8g02641 Vimu-Chr8 36834116 36842889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu8g02641 1 810 Glycosyltransferase AT2G21770 76.904 0.0 1313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu8g02641 K10999 - gmx:100798759 1446.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g02641 8 36834116 36842889 Vimu8g02641 8 36834116 36842889 ECH
Vimu8g02641 8 36834116 36842889 Vimu3g02906 3 43149988 43155254 PCT