Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu4g0995 ATGGACACCAACGGGAGACTAATAGCAGGGTCTCATAACAGGAATGAGTTTGTTCTTATCAATGCTGATGAGACTGCAAGAGTGACTGCTGTCACAGAATTAAGTGGTCAAATTTGTCAGATCTGTGGGGATGAGTTAGAAGTTACAGTGATCGGGGAGCCATTTGTTGCTTGCAATGAATGTGCATTCCCTGTGTGCAGACCTTGCTATGAGTATGAAAGAAGAGAGGGTAACCAAGTTTGTCCTCAGTGTAAAACGAGATATAAGCGAATCAAAGGTAGTGCTAGAGTTGAGGGTGATGAAGAAGAGGATAACACTGATGATTTGGAAAGCGAGTTTGATTTTGGAGGCAATCTTAGGCGAGATCATCATCACATGGCTGAGGCCATGTTCTCTACACGCCTTAACTATGGTTCAGTCAATGGTTCAGTCCACACACCATCAGAGTTTGATGCAGCTTCTGTGGCTTCTGAGATCCCTCTACTGACATATGGTCAAGAGGATGTGGGCATTTCTGCTGATAAACATGCACTCATTCTTCCTCCATTCATGGCTCGAGGGAAACGGATTTATCCTATGCCTTTTCCTGATTCATCTGTACCTGTTCAACCTAGACCTATGGATCCTAAAAAGGATATAGCAGTTTATGGATATGGAAGTGTTGCATGGAAGGAAAGGATGGAGGATTGGAAGAAAAAGCAAAGTGAAAAACTTCAGGTGGTTAGGCATGATGGGGGTAAGGATAGTGATGATCTGGATGATCCTGACTTGCCAAAAATGGATGAAGGAAGGCAACCACTGTGGAGAAAGCTGCCAATTAGTTCAAGCAGGATAAATCCATACAGAATCATAATAGTACTGCGGATTGTCATTCTTGGCCTCTTTTTCCATTATAGAATTCTCCATCCAGTCAATGATGCATATGCATTGTGGCTCACATCAGTAATATGTGAAATCTGGTTTGCTGTGTCATGGATTTTTGATCAGTTCCCAAAATGGAGCCCAATAATGCGGGAAACATACCTTGATCGTTTATCTCTAAGGTACGAGAAAGAAGGAAAACCATCTCAGTTAGCTGATATAGATGTGTTTGTCAGTACAGTGGATCCTATGAAAGAGCCTCCACTTATAACTGCAAACACAGTTCTGTCCATCCTTGCTGTGGATTATCCAGTGGAGAAGGTTGCATGTTATGTCTCAGATGATGGTGCTGCAATGCTTACATTTGAAGCACTCTCTGAGACTTCTGAGTTTGCAAGGAAATGGGTTCCATTCTGCAAGAAGTTCAGCATTGAACCACGGGCTCCAGAATGGTATTTTGCACAAAAGGTTGACTACTTGAAGGATAAAGTTGATGCAGGATTTATAAGAGAACGTCGTGCCATTAAGAGGGAGTATGAAGAGTTCAAAGTGAGGATTAATGCATTGGTGGCAATGGCACAGAAGGTTCCTGAGGATGGTTGGACAATGCAGGATGGTACACCATGGCCTGGGAACAATGTCAGAGATCATCCTGGAATGATACAAGTTTTCCTTGGTCAAAATGGTGTTCGTGACATTGAAGGAAATGAATTACCTCGACTTGTCTATGTGTCTCGTGAGAAAAGACCTGGATATGAGCACCACAAGAAAGCTGGAGCTATGAATGCTTTGGTGAGAGTCTCAGCAATAATCACAAATGCTCCTTACCTACTGAATGTTGATTGTGATCACTACATAAATAATAGTAAGGCCCTTCGTGAATCCATGTGCTTCATGATGGATCCTACATCAGGGAAAAAAATATGCTATGTACAGTTTCCCCAAAGATTTGATGGGATTGATCGTAATGATAGATACTCAAATCGCAATGTTGTATTCTTTGATATCAATATGAAAGGTTTGGATGGGATCCAAGGACCAATATATGTGGGAACTGGGTGTGTCTTCAGGAGGCAGGCATTTTATGGATATGACGCTCCTGCTACGAAGAAACCACCAAGGAAGACATGTAACTGTTGGCCTAAATGGTGTTGCGGTCTGTGTTGTGGATCTAGTAAGAGAAAGATTAAATCAAAGTCAAGTATGAAAAAGATGGTAAAGAATAAGGATGACACTAAGCAAATGCATGCACTAGAAAATATTGAAGAGGGAATTGAAGGATTTGACAACGAGAAGTCCTCACTAATGTCTCAACAAAAGTTTGAGAAGAAATATGGGCAATCATCTGTTTTCATAGCTTCAACACTCATGGAAGATGGGGGTATTCCAAAAGCAGCAAGTTCTGCGACACTCTTGAAAGAAGCCATCCATGTAATTAGTTGTGGATATGAGGATAAGACAGAATGGGGGAAAGAGGTAGGGTGGATATATGGATCAGTTACAGAAGATATTTTAACAGGTTTCAAGATGCATTGTCATGGTTGGAGATCTGTGTACTGCATGCCCAAAAGGCCTGCTTTCAAGGGTTCAGCTCCTATAAATCTCTCAGATCGTCTGCATCAAGTTCTTCGATGGGCGCTTGGATCTGTTGAGATCTTTTTCAGTAGGCATTGTCCTATTTGGTATGGTTATGGTGGTGGCTTGAAATCGCTGGAACGATTCTCTTACATAAACTCAGTTGTTTATCCTCTGACTTCAGTTCCCTTAATTGCTTACTGTGCATTGCCAGCTGTCTGTCTGCTCACTGGAAAATTCATTGTCCCTGAGATAAGTAACTATGCCAGTATCATTTTCATGGCCCTATTCATCTCTATAGCTGCAACTGGCATCCTGGAAATGCAGTGGGGAGGTGTTGGTATACATGACTGGTGGAGGAATGAGCAGTTCTGGGTTATTGGTGGTGCCTCCTCACATCTGTTTGCTCTCTTTCAGGGTTTGCTCAAAGTTCTGGCAGGAGTTAACACAAACTTCACTGTCACATCCAAAGCTGCAGACGATGGAGATTTTGCTGAACTCTACATCTTCAAGTGGACATCCTTGTTGATCCCTCCCTTGACCCTACTAATCATAAACATAATTGGAGTCATTGTTGGTGTGTCAGATGCTATAAATAATGGCTATGATTCATGGGGTCCTTTGTTTGGCAGGCTATTTTTCGCCCTTTGGGTCATTGTCCATCTTTACCCTTTCCTCAAGGGTGTCATGGGTAAACAGGAAGGTGTTCCTACCATCATATTGGTCTGGGCCATTCTTCTGGCTTCAATCTTAACACTACTTTGGGTGAGGATCAACCCATTTTTGGCCAAAAATGATATTGTGCTGGAAATTTGTGGATTGAAGTGTGACTAA 3270 0.4217 MDTNGRLIAGSHNRNEFVLINADETARVTAVTELSGQICQICGDELEVTVIGEPFVACNECAFPVCRPCYEYERREGNQVCPQCKTRYKRIKGSARVEGDEEEDNTDDLESEFDFGGNLRRDHHHMAEAMFSTRLNYGSVNGSVHTPSEFDAASVASEIPLLTYGQEDVGISADKHALILPPFMARGKRIYPMPFPDSSVPVQPRPMDPKKDIAVYGYGSVAWKERMEDWKKKQSEKLQVVRHDGGKDSDDLDDPDLPKMDEGRQPLWRKLPISSSRINPYRIIIVLRIVILGLFFHYRILHPVNDAYALWLTSVICEIWFAVSWIFDQFPKWSPIMRETYLDRLSLRYEKEGKPSQLADIDVFVSTVDPMKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFAQKVDYLKDKVDAGFIRERRAIKREYEEFKVRINALVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNELPRLVYVSREKRPGYEHHKKAGAMNALVRVSAIITNAPYLLNVDCDHYINNSKALRESMCFMMDPTSGKKICYVQFPQRFDGIDRNDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAFYGYDAPATKKPPRKTCNCWPKWCCGLCCGSSKRKIKSKSSMKKMVKNKDDTKQMHALENIEEGIEGFDNEKSSLMSQQKFEKKYGQSSVFIASTLMEDGGIPKAASSATLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPIWYGYGGGLKSLERFSYINSVVYPLTSVPLIAYCALPAVCLLTGKFIVPEISNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGDFAELYIFKWTSLLIPPLTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWAILLASILTLLWVRINPFLAKNDIVLEICGLKCD* 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu4g0995 1089 Pfam Zinc-binding RING-finger 31 105 IPR027934 -
Pvu4g0995 1089 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Pvu4g0995 1089 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1088 - -
Pvu4g0995 1089 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 507 656 IPR029044 -
Pvu4g0995 1089 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 9 [UDP-FORMING]-RELATED 1 1088 - -
Pvu4g0995 1089 MobiDBLite consensus disorder prediction 238 263 - -
Pvu4g0995 1089 SUPERFAMILY Nucleotide-diphospho-sugar transferases 374 871 IPR029044 -
Pvu4g0995 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Pvu4g0995 1089 SUPERFAMILY RING/U-box 27 107 - -
Pvu4g0995 1089 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Pvu4g0995 1089 Pfam Cellulose synthase 361 1078 IPR005150 GO:0016020|GO:0016760|GO:0030244
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu4g0995 Pvu-Chr4 25319515 25328549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu4g0995 1 1088 Glycosyltransferase AT5G64740 78.093 0.0 1762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu4g0995 K10999 - gmx:100798759 2064.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu4g0995 4 25319515 25328549 Pvu4g0995 4 25319515 25328549 ECH
Pvu4g0995 4 25319515 25328549 Pvu7g0840 7 8016723 8023135 PCT