Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0087 ATGGCGTTCTCGATTTCAGCATCCTCTACTCTTGTTTCTTCCACGCTTTTTGTACCAACTTCTTCATCTTCCACAAAACTATCCTCGTTTTCGTCGCTTCAATTTCCCCTCCACACTCAACTTCTTCACTTTCCAACCTTCTCTTCCTCACGCCCTCGAATCCTTCCCCTGGTTGTTGAAGCAAAGAAACAAAGCTTTTCCACGTTTGGTGAATTGCTCGATAACGCTGACAAACCTGTATTGGTTGACTTCTATGCTACCTGGTGTGGTCCTTGTCAGTTTATGATTCCCATACTCAATGAAGTAAGCACTCGGCTTAATGATAAGATACAAGTTGTGAAGATTGATACTGAGAAGTATCCTTCTATTGCTAACAAATATGATATTCAGGCATTGCCTACTTTCATCATTTTTAAGGATGGAGAACCCTACGATCGCTTTGAAGGAGCAATGAGTGCAGATCAGCTCGTTGAACGCATAGAAAACACTCTCAAAGTTAAGCAATAA 507 0.4142 MAFSISASSTLVSSTLFVPTSSSSTKLSSFSSLQFPLHTQLLHFPTFSSSRPRILPLVVEAKKQSFSTFGELLDNADKPVLVDFYATWCGPCQFMIPILNEVSTRLNDKIQVVKIDTEKYPSIANKYDIQALPTFIIFKDGEPYDRFEGAMSADQLVERIENTLKVKQ* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0087 168 ProSiteProfiles Thioredoxin domain profile. 44 165 IPR013766 -
Lan20g0087 168 CDD TRX_family 67 161 - -
Lan20g0087 168 PANTHER GEO12009P1 5 168 - -
Lan20g0087 168 Pfam Thioredoxin 66 161 IPR013766 -
Lan20g0087 168 ProSitePatterns Thioredoxin family active site. 81 99 IPR017937 -
Lan20g0087 168 PANTHER THIOREDOXIN Y2, CHLOROPLASTIC 5 168 - -
Lan20g0087 168 PRINTS Thioredoxin family signature 80 88 - -
Lan20g0087 168 PRINTS Thioredoxin family signature 88 97 - -
Lan20g0087 168 PRINTS Thioredoxin family signature 128 139 - -
Lan20g0087 168 Gene3D Glutaredoxin 57 167 - -
Lan20g0087 168 SUPERFAMILY Thioredoxin-like 65 165 IPR036249 -
Lan20g0087 168 TIGRFAM thioredoxin: thioredoxin 67 163 IPR005746 GO:0015035
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0087 Lan-Chr20 505662 508707 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0087 - - jre:109008535 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0087 20 505662 508707 Lan20g0087 20 505662 508707 ECH