Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1556 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1557 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g01115 . . . . . . . . . . . . Gma06g02794 . . . . . . . Lal12g0092 Lal24g0078 . . . . . . . . . . . . . . . . . . . . . . . Mal1g2170 . . . . . . . Mtr1g3642 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr1g0860 . . . Tsu01g04294 . . . . . . . . . . . . .
Vvi18g1558 . . . . . . Aed7g0729 . . . . . . . . . . . . . . . . . . . . . . . Cca08g00848 . . . . . . . . . . . Gma16g01487 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g4389 . . . . . . . . . . . . . . . . . Ssu9g0085 . . . . . . . . . . . . . . . . . . . . .
Vvi18g1559 . . . . . . . . Aev09g2130 . Ahy19g2808 . Aip09g03269 . . . . . . Apr6g1296 . . . . Bisa01g0874 . . . . . . . . . Dod06g0893 . . . Glsi01g1332 . . Gma20g01569 Gma16g01489 . . . . . . . Lal24g0075 . . Lal9g0871 . . . . . . . . Lasa1g02717 . . . . . . . . . Lja5g0723 . . . Mepo5g04111 . Mesa22g01481 . . . . . . . . . . . . . . . . . . . Pumo6g02387 . Pvu4g1010 . . . Seca10g03615 . Spst4g03377 . . . . . . . Trre11g01011 . . . Vian8g00881 . Vifa1g04707 . Vimu8g02625 . Viun4g01838 . Vivi2g05246 . . .
Vvi18g1560 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1561 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1562 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car04g01119 . . . . . . . . . . . Gma10g02145 . . . Gso10g2010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g2764 Mal1g2164 . . . . . . . Mtr1g3648 . . . . . . . Psa6g4395 . . . . . . . . . . . . . . . . . . . Sto10g2117 . Tpr1g0855 . . . Tsu01g04299 . . . . . . . . . . . . .
Vvi18g1563 . . . . . . . . Aev09g2131 . Ahy19g2809 . Aip09g03270 . . . Amo19g3571 . . Apr6g1295 Arst5g04497 . Bach1g00019 . Bisa01g0872 . . . Car04g01120 Car06g02998 . . . . Dod06g0892 . . . Glsi01g1334 . Gma10g02146 Gma20g01568 Gma16g01491 . Gso10g2011 Gso10g2011 Gso10g2011 . . . Lal24g0074 . Lal2g0984 Lal9g0870 . . . . . . Lapu4g00850 . Lasa1g02727 . . . . . . . . . Lja5g0722 Lja2g2763 Mal1g2163 . . . Mesa22g01490 . . . Mtr1g3649 . . . Phco5g00956 . . . Psa6g4396 . Pste9g01012 . . Pte9g00436 . . Pumo6g02389 . Pvu4g1011 . . . Seca10g03616 . Spst4g03375 . . . Sto10g2118 . Tpr1g0854 . Trre11g01010 . Tsu01g04300 . . . Vifa1g04711 . . . Viun4g01839 . Vivi2g05244 . . .
Vvi18g1564 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1565 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi18g1556 Chr18 19675813 19677806 +
Vvi Vvi18g1557 Chr18 19680536 19687170 +
Car Car04g01115 Chr04 11249137 11253538 -
Gma Gma06g02794 Chr06 51797630 51800851 +
Lal Lal12g0092 Chr12 623674 626255 +
Lal Lal24g0078 Chr24 500161 507342 +
Mal Mal1g2170 Chr1 28630856 28632663 +
Mtr Mtr1g3642 Chr1 48041850 48046958 -
Tpr Tpr1g0860 Chr1 7321296 7324559 +
Tsu Tsu01g04294 Chr01 50705005 50708468 -
Vvi Vvi18g1558 Chr18 19689715 19690805 +
Aed Aed7g0729 Chr7 5510200 5511285 +
Cca Cca08g00848 Chr08 18846286 18858776 +
Gma Gma16g01487 Chr16 34142614 34154324 -
Psa Psa6g4389 Chr6 384701292 384703405 -
Ssu Ssu9g0085 Chr9 7716005 7718680 +
Vvi Vvi18g1559 Chr18 19691814 19692987 +
Aev Aev09g2130 Chr09 24308712 24315658 +
Ahy Ahy19g2808 Chr19 149952285 149953449 +
Aip Aip09g03269 Chr09 138700185 138700977 +
Apr Apr6g1296 Chr6 18278414 18291749 -
Bisa Bisa01g0874 Chr01 14438145 14456788 -
Dod Dod06g0893 Chr06 11391863 11392655 -
Glsi Glsi01g1332 Chr01 67828301 67835100 +
Gma Gma20g01569 Chr20 42785260 42787177 -
Gma Gma16g01489 Chr16 34225386 34233452 +
Lal Lal24g0075 Chr24 485371 486213 -
Lal Lal9g0871 Chr9 6521771 6528376 -
Lasa Lasa1g02717 Chr1 521849877 521856433 +
Lja Lja5g0723 Chr5 6664768 6665728 -
Mepo Mepo5g04111 Chr5 52250129 52257918 -
Mesa Mesa22g01481 Chr22 30332815 30333633 +
Pumo Pumo6g02387 Chr6 47620119 47623998 +
Pvu Pvu4g1010 Chr4 25741646 25750944 +
Seca Seca10g03615 Chr10 68006760 68014585 +
Spst Spst4g03377 Chr4 73923882 73931395 -
Trre Trre11g01011 Chr11 9236589 9243743 -
Vian Vian8g00881 Chr8 20635641 20646160 -
Vifa Vifa1g04707 Chr1 735268831 735273834 +
Vimu Vimu8g02625 Chr8 36387715 36394475 +
Viun Viun4g01838 Chr4 32700652 32708217 +
Vivi Vivi2g05246 Chr2 175723107 175732694 -
Vvi Vvi18g1560 Chr18 19698453 19699507 +
Vvi Vvi18g1561 Chr18 19707183 19708189 +
Vvi Vvi18g1562 Chr18 19711564 19713217 +
Car Car04g01119 Chr04 11299696 11300731 +
Gma Gma10g02145 Chr10 48928874 48929708 +
Gso Gso10g2010 Chr10 47053975 47055084 +
Lja Lja2g2764 Chr2 42117727 42123941 -
Mal Mal1g2164 Chr1 28544401 28545286 -
Mtr Mtr1g3648 Chr1 48096332 48097536 +
Psa Psa6g4395 Chr6 385003670 385004844 +
Sto Sto10g2117 Chr10 31046155 31053708 +
Tpr Tpr1g0855 Chr1 7286311 7287545 -
Tsu Tsu01g04299 Chr01 50755833 50757149 +
Vvi Vvi18g1563 Chr18 19720893 19740259 -
Aev Aev09g2131 Chr09 24318427 24319647 -
Ahy Ahy19g2809 Chr19 149955455 149957404 -
Aip Aip09g03270 Chr09 138703105 138705212 -
Amo Amo19g3571 Chr19 150271577 150273790 +
Apr Apr6g1295 Chr6 18274344 18276422 +
Arst Arst5g04497 Chr5 106271932 106273664 -
Bach Bach1g00019 Chr1 187679 189548 -
Bisa Bisa01g0872 Chr01 14411648 14412847 +
Car Car04g01120 Chr04 11303325 11305318 -
Car Car06g02998 Chr06 51236093 51239476 +
Dod Dod06g0892 Chr06 11384533 11386910 +
Glsi Glsi01g1334 Chr01 67857356 67858558 -
Gma Gma10g02146 Chr10 48934653 48936628 -
Gma Gma20g01568 Chr20 42781204 42783414 +
Gma Gma16g01491 Chr16 34248193 34258534 -
Gso Gso10g2011 Chr10 47059100 47061348 -
Gso Gso10g2011 Chr10 47059100 47061348 -
Gso Gso10g2011 Chr10 47059100 47061348 -
Lal Lal24g0074 Chr24 482546 483772 +
Lal Lal2g0984 Chr2 6730170 6731324 +
Lal Lal9g0870 Chr9 6512205 6520141 +
Lapu Lapu4g00850 Chr4 21743194 21745261 +
Lasa Lasa1g02727 Chr1 527632520 527633659 -
Lja Lja5g0722 Chr5 6660858 6663156 +
Lja Lja2g2763 Chr2 42111593 42113410 +
Mal Mal1g2163 Chr1 28539317 28540525 +
Mesa Mesa22g01490 Chr22 30472778 30473662 -
Mtr Mtr1g3649 Chr1 48102734 48104584 -
Phco Phco5g00956 Chr5 15234699 15235853 +
Psa Psa6g4396 Chr6 385053220 385058519 -
Pste Pste9g01012 Chr9 6638799 6639881 -
Pte Pte9g00436 Chr9 5278844 5280502 +
Pumo Pumo6g02389 Chr6 47637619 47639859 -
Pvu Pvu4g1011 Chr4 25768920 25771062 -
Seca Seca10g03616 Chr10 68022166 68023323 -
Spst Spst4g03375 Chr4 73909195 73910346 +
Sto Sto10g2118 Chr10 31068764 31069996 +
Tpr Tpr1g0854 Chr1 7279986 7281977 +
Trre Trre11g01010 Chr11 9230157 9231290 +
Tsu Tsu01g04300 Chr01 50763584 50764810 -
Vifa Vifa1g04711 Chr1 735640943 735642103 -
Viun Viun4g01839 Chr4 32716294 32718380 -
Vivi Vivi2g05244 Chr2 175721338 175722908 -
Vvi Vvi18g1564 Chr18 19750714 19751220 +
Vvi Vvi18g1565 Chr18 19777735 19784603 +