Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma16g01486 ATGGACACCAAAGGGAGACTAGTTGCAGGGTCTCATAACAGGAATGAGTTTGTTCTTATCAATGCTGATGAAACTGCAAGAGTAGCTGTCACAGAATTAAGTGGTCAAATTTGTCAGATCTGTGGGGATGAGCTGGAAGTTACTGTGAATGGGGAGCCATTTGTTGCTTGCAATGAATGTGCATTCCCTGTGTGCAGACCTTGTTATGAGTATGAAAGAAGAGAGGGCAACCAAGTTTGTCCTCAGTGTAAAACCAGATATAAGCGCATCAAAGGTAGTCCTAGAGTTGAGGGTGATGAAGAAGAGGATGATACTGATGATTTAGAAAGTGAGTTTGATATTGGGAGTGTGTTCTCTGCTCGCCTTAACTATGGTTCACAGGTGAATGGTTCAGTGATCCACGCACCATCAGAGTTTGATGCAGCTTCGGTGGCTTCTGAGATCCCTCTCCTAACATATGGTCAAGAGGATGTCGGCATTTCTGCTGATAAACATGCTCTTATTCTTCCTCCATTCACGGCTCGAGGGAAACGGGTTTATCCCATGCCTTTTCCTGATTCATCTGTACCTGTTCAACCAAGACCTATGGATCCTAAAAAGGATATTGCTGTTTATGGATATGGAAGTGTTGCATGGAAGGAACGGATGGAGGATTGGAAGAAAAAACAAAGTGAAAAACTTCAGGTTGTTAGACATGAAGGGGATAAAGATAGTGATGAGCTGGATGATCCTGACTTGCCAAAAATGGATGAAGGCAGACAGCCACTTTGGAGAAAGTTGCCTATTAGTTCAAGCAGGATAAATCCATACAGAATCATAATAGTACTTCGGATTGCCATTCTTTGCCTCTTTTTTCATTATAGAATCCTCCATCCAGTCAATGATGCATATGCATTGTGGCTCACATCAGTAATATGTGAAATCTGGTTTGCTGTGTCATGGATTTTTGATCAGTTTCCAAAATGGAGCCCAATTCTGCGAGAAACATACCTTGATCGTTTATCTCTTCGGTATGAGAAAGAAGGAAAGCCATCTCAGTTATCTGATATAGACGTGTTCGTTAGTACAGTGGACCCTATGAAGGAACCTCCACTCATTACTGCAAACACAGTTCTGTCTATCCTTGCTGTGGATTATCCGGTGGACAAGGTTGCATGCTATGTTTCAGATGATGGTGCTGCCATGCTTACATTTGAAGCACTCTCCGAGACTTCTGAGTTTGCAAGGAAATGGGTTCCATTCTGTAAGAAGTTCTGCATTGAACCACGAGCTCCTGAATGGTATTTTGCTCAGAAGGTTGACTACTTGAAGGATAAGGTGGATGCCACATTTATAAGAGAACGTCGTGCCATTAAGagggagtatgaagagttcaaagtgaggattaatgcattggtggctttggcacaaaaggttcctgaggatggttggacaatgcaggatggtactccatggcccgggaacaatgtcagagatcatcccggaatgatacaagttttccttggtcagaatggtgttcgtgacattgaaggaaatgaattacctcgtcttgtctatgtgtctcgtgagaaaagacctggatatgatcaccacaaaaaagctggggctatgaatgctttggtgagagtctcagcaataatcaccaatgctccctatgtactgaatgttgattgtgatcactacataaataacagtaaggcccttcgtgaagccatgtgcttcatgatggatcctacatcagggaaaaaaatatgctatgtacagtttcctcaaagatttgatgggattgatcgtcatgatagatactcgaatcgcaatgttgtattctttgatatcaatatgaaaggtttagatggcatccaaggaccaatatatgtgggaactgggtgtgtcttcaggaggcaggcattttatggatgtgatgcccctacttcgaagaaagcaccaaggaagacatgtaactgttggcctaaatggtgctgctgtctgtgttgtggatctaggaagaaaaagattaaagcaaagtccagtgtgaaaaagaagataaagaataaggatgatttaaagcaaatgcatgcactagaaaatattgaagagggaattgaaggaattgacaatgagaaatcatcattaatgtctcaatcgaagtttgagaagaagtttgggcaatcatctgttttcatagcttcaacactctTGGAAGATGGGGGTGTTCCAAAAGCAGCAAGTTCCGCAACACTCTTGAAAGAGGCCATCCATGTAATTAGTTGTGGTTATGAAGATAAGACAGAATGGGGGAAAGAGGTTGGGTGGATATATGGCTCAGTTACAGAAGATATTTTAACAGGTTTCAAGATGCATTGTCATGGTTGGAGATCTGTGTACTGCATGCCAAAAAGGCCTGCTTTTAAGGGTTCAGCTCCTATAAATCTCTCAGATCGTCTGCATCAAGTTCTTCGGTGGGCACTTGGATCTGTTGAGATCTTTTTCAGTAGGCATTGTCCCATATGGTATGGTTATGGTGGTGGCTTGAAATCGCTGGAACGATTCTCTTACATAAACTCAGTAGTTTATCCTCTGACTTCAATTCCCTTAATCGCCTACTGCGCATTGCCAGCGGTCTGTCTGCTCACTGGGAAGTTCATTGTCCCCGAGATAAGTAACTATGCCAGTATCATTTTCATGGCCCTCTTCATCTCTATAGCTGCAACTGGCATCCTGGAAATGCAGTGGGGAGGTGTCGGTATACACGACTGGTGGAGGAATGAGCAGTTCTGGGTCATTGGTGGTGCCTCCTCACATCTCTTTGCTCTCTTTCAGGGTTTGCTCAAAGTTCTGGCAGGAGTCAACACAAACTTCACAGTCACATCCAAAGCAGCAGATGATGGAGAGTTTGCTGAACTCTACATCTTCAAGTGGACATCCTTGTTGATCCCTCCCTTGACCCTACTAATCTTAAACATCATTGGAGTCATTGTTGGTGTCTCAGATGCCATAAACAATGGCTATGATTCATGGGGTCCTTTGTTTGGGAGGCTATTTTTTGCCCTTTGGGTCATTGTCCACCTTTACCCTTTCCTCAAGGGTGTCATGGGAAAACAAGAAGGTGTTCCTACCATCATTTTGGTTTGGGCTATTCTTCTGGCTTCCATATTGACACTACTTTGGGTGAGAATCAACCCATTCTTGGCCAAAAATGATGTGGTGCTGGAAATTTGTGGATTGAATTGTGACTAA 3237 0.3219 MDTKGRLVAGSHNRNEFVLINADETARVAVTELSGQICQICGDELEVTVNGEPFVACNECAFPVCRPCYEYERREGNQVCPQCKTRYKRIKGSPRVEGDEEEDDTDDLESEFDIGSVFSARLNYGSQVNGSVIHAPSEFDAASVASEIPLLTYGQEDVGISADKHALILPPFTARGKRVYPMPFPDSSVPVQPRPMDPKKDIAVYGYGSVAWKERMEDWKKKQSEKLQVVRHEGDKDSDELDDPDLPKMDEGRQPLWRKLPISSSRINPYRIIIVLRIAILCLFFHYRILHPVNDAYALWLTSVICEIWFAVSWIFDQFPKWSPILRETYLDRLSLRYEKEGKPSQLSDIDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFCIEPRAPEWYFAQKVDYLKDKVDATFIRERRAIKREYEEFKVRINALVALAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNELPRLVYVSREKRPGYDHHKKAGAMNALVRVSAIITNAPYVLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAFYGCDAPTSKKAPRKTCNCWPKWCCCLCCGSRKKKIKAKSSVKKKIKNKDDLKQMHALENIEEGIEGIDNEKSSLMSQSKFEKKFGQSSVFIASTLLEDGGVPKAASSATLLKEAIHVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFFSRHCPIWYGYGGGLKSLERFSYINSVVYPLTSIPLIAYCALPAVCLLTGKFIVPEISNYASIIFMALFISIAATGILEMQWGGVGIHDWWRNEQFWVIGGASSHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFAELYIFKWTSLLIPPLTLLILNIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGVMGKQEGVPTIILVWAILLASILTLLWVRINPFLAKNDVVLEICGLNCD 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma16g01486 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 111 IPR013083 -
Gma16g01486 1078 PANTHER CELLULOSE SYNTHASE 3 1077 - -
Gma16g01486 1078 Pfam Cellulose synthase 350 1068 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gma16g01486 1078 SUPERFAMILY RING/U-box 29 106 - -
Gma16g01486 1078 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 3 1077 - -
Gma16g01486 1078 Coils Coil 694 714 - -
Gma16g01486 1078 MobiDBLite consensus disorder prediction 227 252 - -
Gma16g01486 1078 CDD mRING-HC-C4C4_CesA_plant 36 86 - -
Gma16g01486 1078 SUPERFAMILY Nucleotide-diphospho-sugar transferases 363 877 IPR029044 -
Gma16g01486 1078 Pfam Zinc-binding RING-finger 31 104 IPR027934 -
Gma16g01486 1078 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 496 646 IPR029044 -
Gma16g01486 1078 ProSiteProfiles Zinc finger RING-type profile. 38 84 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma16g01486 Gma-Chr16 34115465 34124450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma16g01486 1 1077 Glycosyltransferase AT5G64740 78.967 0.0 1767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma16g01486 K10999 - gmx:100798759 2137.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma16g01486 16 34115465 34124450 Gma16g01486 16 34115465 34124450 ECH
Gma16g01486 16 34115465 34124450 Gma02g00728 02 7013959 7022505 GST
Gma16g01486 16 34115465 34124450 Gma10g02137 10 48858904 48869951 PCT
Gma10g02137 10 48858904 48869951 Gma16g01486 16 34115465 34124450 PCT