Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g0056 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0057 Acco10g1587 . Accr4g01162 . Adu08g00106 . . Aed9g0134 Aev08g0110 . Ahy17g2128 . Aip07g02265 . Alju08g1199 . . . . . Arst8g00128 . . . Bisa09g2005 . Bva06g01821 Bva10g01025 . Car05g03357 . Cca07g00171 Dere04g0133 . . . Enph1g1072 . Glsi08g1992 . Gma04g00135 Gma06g00128 . . Gso4g0129 Gso4g0129 . . . . Lal21g0061 . . . . . . . . . Lapu9g02256 . Lasa5g04481 . . . . . . . . . Lja1g2273 . . Mal2g0344 Mepo3g07896 . . . Mibi05g1113 . . Mtr3g4375 . . Phco7g00334 . Prci8g0404 . . . Pste2g00777 . . Pte1g01098 . . . . Pvu9g0132 . Rops10g02419 . . . Spst9g00331 . . . . . . Tpr7g0133 . . . Tsu07g00148 Vian4g02351 . Vifa2g04448 . Vimu10g03439 . Viun9g03620 . . . . Vra5g1746
Vvi18g0058 . . . . . . . Aed9g0135 . . Ahy17g2129 . Aip07g02266 . . . . . . . . . . . . . . . . Car05g03356 . Cca07g00172 . . . . . . . . Gma04g00136 Gma06g00129 . . Gso4g0130 Gso4g0130 . . . . Lal21g0062 . . . . . . . . . . . . . . . . . . . . . Lja1g2274 . . Mal2g0348 . . . . . . . Mtr3g4374 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g0134 . . . Tsu07g00149 . . . . . . . . . . . Vra5g1745
Vvi18g0059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0060 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0061 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0062 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa6g3004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0063 . . Accr4g01391 . . . . Aed9g0136 Aev08g0111 . Ahy17g2131 . Aip07g02267 . . . . . . . . . . . Bisa09g2157 . . Bva10g01024 . Car05g03355 . Cca07g00174 . . Dod08g2334 . . . . . Gma04g00137 Gma06g00130 . . Gso4g0131 Gso4g0131 . . Lal4g0022 Lal17g0030 Lal21g0064 . . . Lan14g0992 Lan14g0992 Lan14g0992 . . . Lapu9g02378 . Lasa5g04666 . . . . . . . . . Lja1g2276 . . Mal2g0349 Mepo3g07742 . . . . . . Mtr3g4373 . . Phco7g00176 . Prci8g0663 . . Psa5g0199 . . . . . . . . Pvu9g0078 . . . . . Spst9g00179 . . . . . . Tpr7g0136 Trre5g05827 . . Tsu07g00152 Vian4g02492 . . . Vimu10g03604 . . . Vivi3g00808 . . Vra5g1744
Vvi18g0064 . . . . . . . Aed9g0137 Aev08g0112 . Ahy17g2132 . Aip07g02268 . . . . . . . . . . . Bisa09g2158 . Bva06g01822 . . Car05g03354 . Cca07g00175 . . . . . . . . Gma04g00138 Gma06g00131 . . Gso4g0132 Gso4g0132 . . . . . . . . . . . . . . Lapu9g02377 . Lasa5g04643 . . . . . . . . . Lja1g2277 . . Mal2g0350 Mepo3g07743 . Mesa9g05612 . . . . Mtr3g4372 . . . . . . . Psa5g0200 . . . . . . . . Pvu9g0077 . . . . . Spst9g00180 . . . . . . Tpr7g0137 Trre5g05824 . . Tsu07g00153 . . . . . . . . Vivi3g00806 . . Vra5g1743
Vvi18g0065 . . . . . . . Aed9g0138 Aev08g0113 . Ahy17g2136 . Aip07g02272 . . . . . . . . . . . . . Bva06g01823 . . Car05g03353 . Cca07g00176 . . . . . . . . . . . . . . . . . Lal17g0031 Lal21g0065 . . . . . . . . . Lapu9g02376 . Lasa5g04642 . . . . . . . . . Lja1g2278 . . Mal2g0351 Mepo3g07745 . Mesa9g05611 . . . . Mtr3g4371 . . . . . . . Psa5g0203 . . . . . . . . Pvu9g0076 . . . . . Spst9g00182 . . . Sto5g0022 . . Tpr7g0138 Trre5g05823 . . Tsu07g00154 . . . . . . . . Vivi3g00805 . . Vra5g1742
   
Previous Page 2467 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Gma Gma04g00135 Chr04 1152817 1154511 -
Gso Gso4g0129 Chr4 1128968 1134657 -
Gso Gso4g0129 Chr4 1128968 1134657 -
Aed Aed9g0134 Chr9 925407 930513 -
Cca Cca07g00171 Chr07 2166541 2168255 -
Vra Vra5g1746 Chr5 23625526 23627231 +
Vvi Vvi18g0056 Chr18 579173 581849 +
Vvi Vvi18g0057 Chr18 582284 583695 -
Acco Acco10g1587 Chr10 29441784 29444490 +
Accr Accr4g01162 Chr4 11026435 11028991 -
Adu Adu08g00106 Chr08 1401470 1403883 -
Aed Aed9g0134 Chr9 925407 930513 -
Aev Aev08g0110 Chr08 616315 617659 -
Ahy Ahy17g2128 Chr17 102332461 102334094 -
Aip Aip07g02265 Chr07 95031817 95034570 -
Alju Alju08g1199 Chr08 9022254 9024969 -
Arst Arst8g00128 Chr8 1401550 1403883 -
Bisa Bisa09g2005 Chr09 31780068 31783239 -
Bva Bva06g01821 Chr06 12560288 12561562 -
Bva Bva10g01025 Chr10 7479964 7481435 +
Car Car05g03357 Chr05 78222546 78224291 +
Cca Cca07g00171 Chr07 2166541 2168255 -
Dere Dere04g0133 Chr04 1404842 1407594 +
Enph Enph1g1072 Chr1 36977453 36980486 +
Glsi Glsi08g1992 Chr08 14030280 14037478 -
Gma Gma04g00135 Chr04 1152817 1154511 -
Gma Gma06g00128 Chr06 1114029 1121725 -
Gso Gso4g0129 Chr4 1128968 1134657 -
Gso Gso4g0129 Chr4 1128968 1134657 -
Lal Lal21g0061 Chr21 451516 453122 -
Lapu Lapu9g02256 Chr9 37135894 37139578 -
Lasa Lasa5g04481 Chr5 666285990 666288336 -
Lja Lja1g2273 Chr1 26477368 26479438 -
Mal Mal2g0344 Chr2 3817997 3819730 -
Mepo Mepo3g07896 Chr3 92003182 92006394 +
Mibi Mibi05g1113 Chr05 13504611 13507186 -
Mtr Mtr3g4375 Chr3 57679043 57680627 +
Phco Phco7g00334 Chr7 2378262 2381258 +
Prci Prci8g0404 Chr8 2544427 2547576 -
Pste Pste2g00777 Chr2 8231160 8234575 +
Pte Pte1g01098 Chr1 29584161 29585350 +
Pvu Pvu9g0132 Chr9 2034267 2037871 -
Rops Rops10g02419 Chr10 42398535 42401368 -
Spst Spst9g00331 Chr9 3144491 3147748 +
Tpr Tpr7g0133 Chr7 1086620 1088433 -
Tsu Tsu07g00148 Chr07 1125910 1127561 -
Vian Vian4g02351 Chr4 40213010 40216347 -
Vifa Vifa2g04448 Chr2 1304980520 1304983456 -
Vimu Vimu10g03439 Chr10 44191156 44194640 -
Viun Viun9g03620 Chr9 41659901 41663268 -
Vra Vra5g1746 Chr5 23625526 23627231 +
Vvi Vvi18g0058 Chr18 589627 592083 +
Aed Aed9g0135 Chr9 940558 942457 +
Ahy Ahy17g2129 Chr17 102371082 102372739 +
Aip Aip07g02266 Chr07 95065518 95067059 +
Car Car05g03356 Chr05 78214274 78216691 -
Cca Cca07g00172 Chr07 2210305 2212976 +
Gma Gma04g00136 Chr04 1160360 1162596 +
Gma Gma06g00129 Chr06 1127705 1130003 +
Gso Gso4g0130 Chr4 1140251 1142989 +
Gso Gso4g0130 Chr4 1140251 1142989 +
Lal Lal21g0062 Chr21 456103 457740 +
Lja Lja1g2274 Chr1 26486697 26494178 +
Mal Mal2g0348 Chr2 3843881 3846161 +
Mtr Mtr3g4374 Chr3 57670251 57672836 -
Tpr Tpr7g0134 Chr7 1092433 1095536 +
Tsu Tsu07g00149 Chr07 1131673 1134315 +
Vra Vra5g1745 Chr5 23618503 23621804 -
Vvi Vvi18g0059 Chr18 595913 596050 -
Vvi Vvi18g0060 Chr18 597496 597777 -
Vvi Vvi18g0061 Chr18 599561 602140 +
Vvi Vvi18g0062 Chr18 602662 605100 -
Psa Psa6g3004 Chr6 252404065 252408366 +
Vvi Vvi18g0063 Chr18 614215 618895 +
Accr Accr4g01391 Chr4 13974092 13978078 +
Aed Aed9g0136 Chr9 954044 957054 +
Aev Aev08g0111 Chr08 623749 637237 +
Ahy Ahy17g2131 Chr17 102481506 102485651 +
Aip Aip07g02267 Chr07 95181858 95185268 +
Bisa Bisa09g2157 Chr09 34681480 34688790 +
Bva Bva10g01024 Chr10 7472909 7477550 -
Car Car05g03355 Chr05 78203074 78207297 -
Cca Cca07g00174 Chr07 2227808 2232301 +
Dod Dod08g2334 Chr08 51432693 51444020 -
Gma Gma04g00137 Chr04 1174145 1179214 +
Gma Gma06g00130 Chr06 1139756 1144913 +
Gso Gso4g0131 Chr4 1154174 1159358 +
Gso Gso4g0131 Chr4 1154174 1159358 +
Lal Lal4g0022 Chr4 148310 152025 +
Lal Lal17g0030 Chr17 171502 176012 +
Lal Lal21g0064 Chr21 460231 464008 +
Lan Lan14g0992 Chr14 16141568 16144910 -
Lan Lan14g0992 Chr14 16141568 16144910 -
Lan Lan14g0992 Chr14 16141568 16144910 -
Lapu Lapu9g02378 Chr9 38322406 38327878 -
Lasa Lasa5g04666 Chr5 685445730 685447472 -
Lja Lja1g2276 Chr1 26512345 26519069 +
Mal Mal2g0349 Chr2 3857225 3862974 +
Mepo Mepo3g07742 Chr3 90646339 90652660 +
Mtr Mtr3g4373 Chr3 57655205 57661996 -
Phco Phco7g00176 Chr7 1151845 1153726 -
Prci Prci8g0663 Chr8 4318016 4323360 +
Psa Psa5g0199 Chr5 14716464 14721096 +
Pvu Pvu9g0078 Chr9 1199329 1204658 -
Spst Spst9g00179 Chr9 1609521 1610681 +
Tpr Tpr7g0136 Chr7 1110653 1116695 +
Trre Trre5g05827 Chr5 57966676 57971717 -
Tsu Tsu07g00152 Chr07 1158918 1164415 +
Vian Vian4g02492 Chr4 41492167 41498584 +
Vimu Vimu10g03604 Chr10 45407270 45409248 +
Vivi Vivi3g00808 Chr3 13161358 13165328 -
Vra Vra5g1744 Chr5 23605684 23610602 -
Vvi Vvi18g0064 Chr18 620890 623810 -
Aed Aed9g0137 Chr9 959234 961988 -
Aev Aev08g0112 Chr08 640086 642078 -
Ahy Ahy17g2132 Chr17 102486472 102489358 -
Aip Aip07g02268 Chr07 95186101 95188824 -
Bisa Bisa09g2158 Chr09 34689649 34693835 -
Bva Bva06g01822 Chr06 12562263 12564174 -
Car Car05g03354 Chr05 78196825 78198935 +
Cca Cca07g00175 Chr07 2235615 2238490 -
Gma Gma04g00138 Chr04 1181241 1183786 -
Gma Gma06g00131 Chr06 1147329 1149857 -
Gso Gso4g0132 Chr4 1161338 1163952 -
Gso Gso4g0132 Chr4 1161338 1163952 -
Lapu Lapu9g02377 Chr9 38317473 38320708 +
Lasa Lasa5g04643 Chr5 682464194 682466502 +
Lja Lja1g2277 Chr1 26520552 26525253 -
Mal Mal2g0350 Chr2 3866675 3869106 -
Mepo Mepo3g07743 Chr3 90656672 90660016 -
Mesa Mesa9g05612 Chr9 91687262 91689525 +
Mtr Mtr3g4372 Chr3 57650036 57652857 +
Psa Psa5g0200 Chr5 14737945 14740978 +
Pvu Pvu9g0077 Chr9 1194298 1197230 +
Spst Spst9g00180 Chr9 1613319 1615855 -
Tpr Tpr7g0137 Chr7 1127729 1130232 -
Trre Trre5g05824 Chr5 57941387 57943412 +
Tsu Tsu07g00153 Chr07 1167614 1170190 -
Vivi Vivi3g00806 Chr3 13148064 13150894 +
Vra Vra5g1743 Chr5 23600836 23604025 +
Vvi Vvi18g0065 Chr18 626505 627498 -
Aed Aed9g0138 Chr9 964842 965405 -
Aev Aev08g0113 Chr08 645918 646499 -
Ahy Ahy17g2136 Chr17 102674911 102676211 -
Aip Aip07g02272 Chr07 95341224 95344338 -
Bva Bva06g01823 Chr06 12566235 12566816 -
Car Car05g03353 Chr05 78186853 78187896 +
Cca Cca07g00176 Chr07 2248774 2250049 -
Lal Lal17g0031 Chr17 178091 178672 -
Lal Lal21g0065 Chr21 464648 469167 -
Lapu Lapu9g02376 Chr9 38310613 38311535 +
Lasa Lasa5g04642 Chr5 682230656 682231234 +
Lja Lja1g2278 Chr1 26530079 26531689 -
Mal Mal2g0351 Chr2 3881792 3882762 -
Mepo Mepo3g07745 Chr3 90676416 90677006 -
Mesa Mesa9g05611 Chr9 91666183 91666773 +
Mtr Mtr3g4371 Chr3 57637725 57638984 +
Psa Psa5g0203 Chr5 14893744 14895033 -
Pvu Pvu9g0076 Chr9 1173795 1175038 +
Spst Spst9g00182 Chr9 1631760 1632311 -
Sto Sto5g0022 Chr5 166484 166960 -
Tpr Tpr7g0138 Chr7 1142448 1143403 -
Trre Trre5g05823 Chr5 57935332 57935901 +
Tsu Tsu07g00154 Chr07 1177588 1178464 -
Vivi Vivi3g00805 Chr3 13109222 13109985 +
Vra Vra5g1742 Chr5 23591467 23592485 +
Acco Acco10g1587 Chr10 29441784 29444490 +
Accr Accr4g01162 Chr4 11026435 11028991 -
Adu Adu08g00106 Chr08 1401470 1403883 -
Alju Alju08g1199 Chr08 9022254 9024969 -
Arst Arst8g00128 Chr8 1401550 1403883 -
Bisa Bisa09g2005 Chr09 31780068 31783239 -
Dere Dere04g0133 Chr04 1404842 1407594 +
Enph Enph1g1072 Chr1 36977453 36980486 +
Glsi Glsi08g1992 Chr08 14030280 14037478 -
Lapu Lapu9g02256 Chr9 37135894 37139578 -
Lasa Lasa5g04481 Chr5 666285990 666288336 -
Mepo Mepo3g07896 Chr3 92003182 92006394 +
Mibi Mibi05g1113 Chr05 13504611 13507186 -
Phco Phco7g00334 Chr7 2378262 2381258 +
Prci Prci8g0404 Chr8 2544427 2547576 -
Pste Pste2g00777 Chr2 8231160 8234575 +
Pte Pte1g01098 Chr1 29584161 29585350 +
Pvu Pvu9g0132 Chr9 2034267 2037871 -
Rops Rops10g02419 Chr10 42398535 42401368 -
Spst Spst9g00331 Chr9 3144491 3147748 +
Vian Vian4g02351 Chr4 40213010 40216347 -
Vifa Vifa2g04448 Chr2 1304980520 1304983456 -
Vimu Vimu10g03439 Chr10 44191156 44194640 -
Viun Viun9g03620 Chr9 41659901 41663268 -