Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco7g00334 ATGAAATTGTTCTTCTCTCTCATCCTCCTCTTCACACTTTACTTGCCTTTCGCCTCTGCCTCCGACACCTCCGATCTGTTCGAACGGTGGTGCAAGGAACACGCCAAAACCTATTCTTCAGAGGAAGAGAAACGCTACAGGTTCCATGTCTTCGAGGACAACTATGCCTTTGTCTCCCAACACAACCACAACGCGAATGATAACAATTCCACCTACACCCTCTCCCTCAACGCTTTCGCCGATCTCACCCACCATGAATTCAAAACCTCACGCCTTGGCTTTTCCCCTTCCTTGCTTCGATTCAAGCGGGTTCAGAATCAACAACCCCGTCACCTTCTACACAATCCTTCAGAGATCGATTGGAGACAGAGCGGCGCTGTTACACCCGTCAAAGACCAAGCAAGCTGCGGTGCATGTTGGGCGTTCTCGGCTACTGGTGCAATTGAAGGTATAAATAAGATTGTTACTGGGTCTCTTGAAAGCCTTTCTGAACAAGAATTGGTAGATTGTGATTCATCCTACAACAGTGGTTGTGAAGGTGGACTAATGGATTATGCGTACCAATTTGTCATTGACAACAAAGGGATTGATACTGAGGATGATTATCCATATCAAGCTCGGCAACGGCCCTGCAATAAGGACAAGTTAAAAAGGCGCATTGTTACAATTGATGATTATGTTGATTTACCTCCGAACGAGGAAGAGCTACTAAAGGCTGTTGCTTCACAGCCTGTAAGTGTAGGCATATGTGGTAGTGAAAGAGCTTTCCAGTTGTACTCACAGGGTATCTTCTCCGGACCATGTTCAACTTCTTTGGATCATGCAGTATTGATAGTAGGATATGGTTCAGAAAATGGAGTTGATTATTGGATTGTAAAGAACTCGTGGGGAAAATATTGGGGAATGAATGGTTACATACACATGATAAGGAACAGCGGCGATTCCAAAGGGATATGCGGAATCAACACATTAGCTTCATATCCTATCAAGACCAAGCCTAATCCTCCTCCTCCCCCAGCTCCTGTAAGATGTAATCTGTTCACTCACTGTTCAGAAGGAGAAACATGTTGTTGTGCCAAGAGCTTTCTTGGAATATGCTTTTCTTGGAAATGCTGTGGGTTAACTTCTGCTGTGTGTTGTAAAGACAAGCGGCATTGTTGCCCTCGTGATTATCCAATTTGTGATACAGAAAAAAGCCAGTGTTTAAAGATTACAAATGGGACGACAACGATCACATCCGGAAATAAAGATTTCTCCAACAAACCAAGAGGTTGGAAATCTAATTGA 1287 0.4406 MKLFFSLILLFTLYLPFASASDTSDLFERWCKEHAKTYSSEEEKRYRFHVFEDNYAFVSQHNHNANDNNSTYTLSLNAFADLTHHEFKTSRLGFSPSLLRFKRVQNQQPRHLLHNPSEIDWRQSGAVTPVKDQASCGACWAFSATGAIEGINKIVTGSLESLSEQELVDCDSSYNSGCEGGLMDYAYQFVIDNKGIDTEDDYPYQARQRPCNKDKLKRRIVTIDDYVDLPPNEEELLKAVASQPVSVGICGSERAFQLYSQGIFSGPCSTSLDHAVLIVGYGSENGVDYWIVKNSWGKYWGMNGYIHMIRNSGDSKGICGINTLASYPIKTKPNPPPPPAPVRCNLFTHCSEGETCCCAKSFLGICFSWKCCGLTSAVCCKDKRHCCPRDYPICDTEKSQCLKITNGTTTITSGNKDFSNKPRGWKSN 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco7g00334 428 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 23 323 IPR013128 GO:0008234
Phco7g00334 428 FunFam Cysteine protease 1 341 404 - -
Phco7g00334 428 SMART GRAN_2 344 401 IPR000118 -
Phco7g00334 428 Gene3D Granulin 340 404 IPR037277 -
Phco7g00334 428 SUPERFAMILY Granulin repeat 341 374 - -
Phco7g00334 428 Gene3D Cysteine proteinases 16 331 - -
Phco7g00334 428 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 272 282 IPR025660 -
Phco7g00334 428 FunFam Senescence-specific cysteine protease 16 330 - -
Phco7g00334 428 CDD Peptidase_C1A 116 328 IPR039417 -
Phco7g00334 428 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 133 144 IPR000169 -
Phco7g00334 428 Pfam Cathepsin propeptide inhibitor domain (I29) 27 87 IPR013201 -
Phco7g00334 428 Pfam Papain family cysteine protease 116 329 IPR000668 GO:0006508|GO:0008234
Phco7g00334 428 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 289 308 IPR025661 -
Phco7g00334 428 SMART pept_c1 115 329 IPR000668 GO:0006508|GO:0008234
Phco7g00334 428 PRINTS Papain cysteine protease (C1) family signature 289 295 IPR000668 GO:0006508|GO:0008234
Phco7g00334 428 PRINTS Papain cysteine protease (C1) family signature 274 284 IPR000668 GO:0006508|GO:0008234
Phco7g00334 428 PRINTS Papain cysteine protease (C1) family signature 133 148 IPR000668 GO:0006508|GO:0008234
Phco7g00334 428 SMART Inhibitor_I29_2 27 87 IPR013201 -
Phco7g00334 428 SUPERFAMILY Cysteine proteinases 22 329 IPR038765 -
Phco7g00334 428 Pfam Granulin 355 402 IPR000118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco7g00334 Phco-Chr7 2378262 2381258 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco7g00334 7 2378262 2381258 Phco7g00334 7 2378262 2381258 ECH