Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03604 ATGAGGAACAATGACGACGACGTTTCAAAGAGAGGGAAGAGCACAAGAGATACAGTGAAGATGGACGAGGGCAAAGCAGCAGCTCAGAAGTCTGTTCAGACTTTTGATGTTCAAAAGGCCCCCAAAAGGAACAAGTTTGCTTTGGCTTGTGCCATATTGGCTTCCATGACTTCCATATTACTTGGCTATGTACTATATATATTGCATGTGTATTTGATGATGACGACGATGATGTGTGAGTTTGGTACAGACGTTGGGGTGATGAGTGGAGCGGTGATATATATCAAGAGGGACCTGAAACTGACGGACGTGCAAATCGAGATCGTGGTAGGAATCATCAACCTTTACTCTCTGATTGGTTCGTGTCTCGCCGGGAGAACCTCGGACTGGATCGGGCGGCGTTACACGATCGTTGTGGCAGGAGGCATCTTCTTCGCCGGAGCCATCCTGATGGGATTCTCTCCAAACTATCCCTTTCTGATGTTCGCGCGGTTTGTGGCGGGCGTGGGCATCGGTTATGCTCTGATGATTGCTCCGGTCTACACGGCGGAAGTGTCCCCTCCTTCGTGTCGTGGTTTTCTGACCTCCTTCCCCGAGGTATTCGTGAATGGAGGGATATTACTGGGATACATATCAAACTACTGCTTTTCGAAGCTGCCACTTCACCTGGGATGGAGGATGATGCTGGGAGTGGGGGCGGTGCCTTCGGTGATCCTGGCGGTGGGAGTGTTAGCCATGCCGGAGTCACCACGATGGCTGGTCATGAGAGGTAGGCTCGGCGAAGCTACAAAAGTTCTCAACAAATTCTCCGACTCTCCCCAAGAGGCTCAGCTCAGGCTAGCAGATATCAAAGCCGCGGCTGGGATCCCGGAGGACTGCAACGACGACGTCGTTCAAGTGACCAACCAGAATAACGGTGGTGAGGGTGTATGGAAAGAGCTAATCCTTTACCCTTCACCCGCGGTGCGTCACATCCTCATCTCCGCTCTGGGCATCCACTTCTTCCAACAGGCTTCCGGCATAGACGCCGTGGTGCTGTACAGCCCCGAGATTTTCAAAAAGGCTGGCCTGGAATCCGACGCCGAGCAGCTTCTGGCGACCGTGGCCGTTGGATTCGCCAAGACCGTTTTCATCTTGGTGGCTACGTTTTTGTTGGATCGGGTCGGGCGTAGGCCCTTGTTATTGACCAGCGTTGGCGGCATGGTCTTCTCGCTTCTCACGCTGGGCGTAAGCCTCACCATCATTGATCGGTCACGCGCCGTGATGAAATGGGCCATTGGCCTGAGCATAGCGATGGTTTTGTCCTACGTGTCGACGTTCTCCGTTGGGGCGGGTCCCATCACGTGGGTGTACAGCTCGGAGATCTTCCCGTTGAGGCTACGCGCCCAGGGTGCGGCTATGGGAGTTGTGGTGAATAGGGTGACGAGTGGAGTTATCTCAATGACGTTCTTGTCCCTGTCTGATAAGATCACTATTGGTGGGGCCTTCTTCATCTTCGGGGGAATCGCGATGTGTGGATGGATCTTTTTCTTTACCATGCTCCCCGAAACACAGGGCAAGACCCTTGAGGAAACGGAAGGGTCTTTTGGTAAATTCTTGGCATGGTCCAAAAGCAAGGGTAATAAGGACAGTGAGAACAATGCAGAGATACAATTGGCGAATTAG 1665 0.5273 MRNNDDDVSKRGKSTRDTVKMDEGKAAAQKSVQTFDVQKAPKRNKFALACAILASMTSILLGYVLYILHVYLMMTTMMCEFGTDVGVMSGAVIYIKRDLKLTDVQIEIVVGIINLYSLIGSCLAGRTSDWIGRRYTIVVAGGIFFAGAILMGFSPNYPFLMFARFVAGVGIGYALMIAPVYTAEVSPPSCRGFLTSFPEVFVNGGILLGYISNYCFSKLPLHLGWRMMLGVGAVPSVILAVGVLAMPESPRWLVMRGRLGEATKVLNKFSDSPQEAQLRLADIKAAAGIPEDCNDDVVQVTNQNNGGEGVWKELILYPSPAVRHILISALGIHFFQQASGIDAVVLYSPEIFKKAGLESDAEQLLATVAVGFAKTVFILVATFLLDRVGRRPLLLTSVGGMVFSLLTLGVSLTIIDRSRAVMKWAIGLSIAMVLSYVSTFSVGAGPITWVYSSEIFPLRLRAQGAAMGVVVNRVTSGVISMTFLSLSDKITIGGAFFIFGGIAMCGWIFFFTMLPETQGKTLEETEGSFGKFLAWSKSKGNKDSENNAEIQLAN 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03604 554 PRINTS Sugar transporter signature 430 451 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g03604 554 PRINTS Sugar transporter signature 78 88 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g03604 554 PRINTS Sugar transporter signature 336 346 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g03604 554 PRINTS Sugar transporter signature 161 180 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g03604 554 PRINTS Sugar transporter signature 453 465 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g03604 554 Gene3D MFS general substrate transporter like domains 48 531 IPR036259 -
Vimu10g03604 554 FunFam probable polyol transporter 4 40 532 - -
Vimu10g03604 554 CDD MFS_PLT 53 524 IPR044776 GO:0005351
Vimu10g03604 554 ProSiteProfiles Major facilitator superfamily (MFS) profile. 70 518 IPR020846 GO:0022857
Vimu10g03604 554 ProSitePatterns Sugar transport proteins signature 2. 166 191 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu10g03604 554 SUPERFAMILY MFS general substrate transporter 67 526 IPR036259 -
Vimu10g03604 554 MobiDBLite consensus disorder prediction 1 24 - -
Vimu10g03604 554 ProSitePatterns Sugar transport proteins signature 1. 124 141 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu10g03604 554 Pfam Sugar (and other) transporter 50 526 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu10g03604 554 NCBIfam sugar porter family MFS transporter 23 525 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu10g03604 554 MobiDBLite consensus disorder prediction 1 25 - -
Vimu10g03604 554 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 43 532 IPR045262 GO:0015144
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03604 Vimu-Chr10 45407270 45409248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03604 39 554 Organic Solute Cotransporters AT3G18830 68.714 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03604 - - gmx:102670364 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03604 10 45407270 45409248 Vimu10g03604 10 45407270 45409248 ECH