Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03439 TTGGGAGTTGGGACCGTGTGGATCATAGGATGTCTTGATCCAAAAGTAGCTTCCTCAACCCTGCTCCATCCTACGTTCCTCCTTTCCAGGAATTCCAACTCAACTCAGCGTTGTAAATTTTGTTTTTCCACGAAAGGTCCGATGAAATTGTTGTTGTCTCTCATCCTCCTCTTCTCACTGTTCTCGCGTTTCGCCTCTGCCTCCGACACCTCAGATCTGTTCGAAAGGTGGTGCAAGGAGCACGCCAAAACCTATTCTTCCGAGGAAGAGAAACGCTACAGGTTCCGCGTGTTCGAAGACAACTATGCCTTTGTCTCCCAACACAACCAGAACGCCAATGCTAACAATTCCACCCACACTCTCTCCCTCAACGCTTTCGCCGATCTCACCCACCATGAATTCAAAACCTCACGCCTTGGATTTTCCCCTTCCTTGCTTCGAGTCAAGCGGGTTCAGAATCAACAACCCCGTCACCCTCTACACCTTCCTTCTGAGATCGATTGGAGACAGAGTGGCGCCGTTACACCCGTCAAAGACCAAGCAAGCTGCGGTGCATGTTGGGCGTTCTCAGCTACTGGTGCCATTGAAGGTATAAATAAGATTGTTACTGGATCTCTTGAAAGCATTTCTGAACAAGAATTAGTAGATTGTGATACATCCTACAACAGTGGTTGTAATGGTGGACTAATGGATTATGCATACCAATTTATCATTGACAACAAAGGTATCGATACAGAGGATGATTATCCATATCAAGCTCGGCAACGGACTTGCAATAAGGACAAGTTAAAAAGGCGTATTGTTACAATTGATGATTATGCTGATTTGCCTCGGAACGAGGAAGAGCTACTAAAGGCCGTTGCTTCGCAGCCTGTAAGTGTAGGCATATGTGGTAGTGACAGAGCTTTTCAGTTGTACTCACAGGGTATTTTCTCCGGACCATGCTCAACTGCGTTGGATCATGCAGTATTGATAGTAGGTTATGGTTCAGAAAATGGAGTTGATTATTGGATTGTAAAGAACTCATGGGGAAAATATTGGGGAATGGATGGTTACATACACATGATACGGAACAGTGGCGATTCCAAAGGGATGTGTGGAATCAACATGTTAGCTTCATATCCTATCAAGACCACGCCTAATCCTCCTCCTCCCCCAGCTCCTGTAAGATGTAATCTGTTCACTCACTGTTCAGAAGGAGAAACATGTTGTTGTGCCAAGAGCTTTCTTGGAATATGCTTTTCTTGGAAATGCTGTGGGTTAACTTCTGCTGTGTGTTGTAAAGACAGGCAGCATTGTTGCCCCCTTGATTATCCAATTTGTGATACAAAAAAGAGCCAATGTTTAAAGATTACAAATGGGACCACAACAATCACAACCGGAAATCAAGATTTCTCCAACAAGCCAAGAGGTTGGAAATCTCATTGA 1428 0.4468 MGVGTVWIIGCLDPKVASSTLLHPTFLLSRNSNSTQRCKFCFSTKGPMKLLLSLILLFSLFSRFASASDTSDLFERWCKEHAKTYSSEEEKRYRFRVFEDNYAFVSQHNQNANANNSTHTLSLNAFADLTHHEFKTSRLGFSPSLLRVKRVQNQQPRHPLHLPSEIDWRQSGAVTPVKDQASCGACWAFSATGAIEGINKIVTGSLESISEQELVDCDTSYNSGCNGGLMDYAYQFIIDNKGIDTEDDYPYQARQRTCNKDKLKRRIVTIDDYADLPRNEEELLKAVASQPVSVGICGSDRAFQLYSQGIFSGPCSTALDHAVLIVGYGSENGVDYWIVKNSWGKYWGMDGYIHMIRNSGDSKGMCGINMLASYPIKTTPNPPPPPAPVRCNLFTHCSEGETCCCAKSFLGICFSWKCCGLTSAVCCKDRQHCCPLDYPICDTKKSQCLKITNGTTTITTGNQDFSNKPRGWKSH 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03439 475 FunFam Cysteine protease 1 388 451 - -
Vimu10g03439 475 CDD Peptidase_C1A 163 375 IPR039417 -
Vimu10g03439 475 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 180 191 IPR000169 -
Vimu10g03439 475 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 69 374 IPR013128 GO:0008234
Vimu10g03439 475 Pfam Papain family cysteine protease 162 376 IPR000668 GO:0006508|GO:0008234
Vimu10g03439 475 SMART pept_c1 162 376 IPR000668 GO:0006508|GO:0008234
Vimu10g03439 475 SMART GRAN_2 391 448 IPR000118 -
Vimu10g03439 475 SUPERFAMILY Cysteine proteinases 69 376 IPR038765 -
Vimu10g03439 475 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 319 329 IPR025660 -
Vimu10g03439 475 SMART Inhibitor_I29_2 74 134 IPR013201 -
Vimu10g03439 475 PRINTS Papain cysteine protease (C1) family signature 336 342 IPR000668 GO:0006508|GO:0008234
Vimu10g03439 475 PRINTS Papain cysteine protease (C1) family signature 321 331 IPR000668 GO:0006508|GO:0008234
Vimu10g03439 475 PRINTS Papain cysteine protease (C1) family signature 180 195 IPR000668 GO:0006508|GO:0008234
Vimu10g03439 475 SUPERFAMILY Granulin repeat 388 421 - -
Vimu10g03439 475 Pfam Cathepsin propeptide inhibitor domain (I29) 74 134 IPR013201 -
Vimu10g03439 475 FunFam Senescence-specific cysteine protease 60 377 - -
Vimu10g03439 475 Pfam Granulin 402 449 IPR000118 -
Vimu10g03439 475 Gene3D Cysteine proteinases 60 378 - -
Vimu10g03439 475 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 336 355 IPR025661 -
Vimu10g03439 475 Gene3D Granulin 387 451 IPR037277 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03439 Vimu-Chr10 44191156 44194640 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03439 - - gmx:100805596 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03439 10 44191156 44194640 Vimu10g03439 10 44191156 44194640 ECH