Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0057 ATGGCTCTCTCCCCATTTTCTAATTTTTTCCTTCTCTTCATTTCCATGGCTGTCTTTGCCTATTCAGCTTTTGCTAGAGATTTCTCAATTGTGGGCTATTCGCCAGATGATCTGACTTCCATGGATAAACTCACTGATCTCTTTGAGTCTTGGATGTCAAAACATGGAAAAAGTTATAGGAGTTTTGAAGAGAAGTTGCATAGATTTGAGGTGTTTCAGGATAATTTGAAGCACATTGATGAGACAAACAAGAAGGTGAGTAGCTACTGGCTTGGATTAAATGAGTTTGCAGACTTGAGCCATGAAGAATTCAAAAGGAAGTATTTGGGGTTGAAGATTGAGCTGCCTAAGAGAAGAGACTCCCCTGAAGAATTTAGCTATAAAGATGTTGCGGATTTGCCAAAGTCTGTGGACTGGAGAAAGAAAGGAGCTGTTGCTCACGTTAAGAACCAAGGAGCATGTGGTAGTTGCTGGGCATTTTCCACAGTAGCTGCAGTTGAGGGCATAAACCAGATTGTGACTGGGAATTTGACTGCTCTGTCTGAGCAAGAGTTGATTGATTGCGACAAACCCTTCAACAATGGGTGCAATGGAGGTCTAATGGATTACGCCTTCGCCTTCATAATCTCTAATGGAGGGCTTCGCAAGGAAGAAGATTACCCTTATGTAATGGAGGAAGGCACGTGTGGTGAAAAGAAGGAAGAATTGGAGGTAGTGACAATTAGCGGATACCATGATGTACCCGAGGACAACGAGCAGAGCTTCTTGAAGGCACTAGCAAACCAGCCTCTGAGTGTGGCAATTGAGGCTTCAAGCAGAGGCTTCCAATTCTACAGTGGGGGTATTTTCAATGGGCATTGTGGGACTGAGCTAGATCATGGAGTGGCAGCTGTTGGATATGGCACATCCAAGGGAGTAGATTACATCACTGTGAAGAACTCCTGGGGATCCAAATGGGGAGAGAAAGGCTATATAAGGATGAAGAGAAACGTAGGGAAGCCTGAGGGGATCTGTGGAATCTACAAAATGGCTTCCTATCCTACTAAAAACAAGTGA 1056 0.4394 MALSPFSNFFLLFISMAVFAYSAFARDFSIVGYSPDDLTSMDKLTDLFESWMSKHGKSYRSFEEKLHRFEVFQDNLKHIDETNKKVSSYWLGLNEFADLSHEEFKRKYLGLKIELPKRRDSPEEFSYKDVADLPKSVDWRKKGAVAHVKNQGACGSCWAFSTVAAVEGINQIVTGNLTALSEQELIDCDKPFNNGCNGGLMDYAFAFIISNGGLRKEEDYPYVMEEGTCGEKKEELEVVTISGYHDVPEDNEQSFLKALANQPLSVAIEASSRGFQFYSGGIFNGHCGTELDHGVAAVGYGTSKGVDYITVKNSWGSKWGEKGYIRMKRNVGKPEGICGIYKMASYPTKNK* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0057 351 SUPERFAMILY Cysteine proteinases 44 348 IPR038765 -
Vvi18g0057 351 Pfam Cathepsin propeptide inhibitor domain (I29) 48 104 IPR013201 -
Vvi18g0057 351 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 291 301 IPR025660 -
Vvi18g0057 351 Pfam Papain family cysteine protease 133 348 IPR000668 GO:0006508|GO:0008234
Vvi18g0057 351 SMART pept_c1 133 348 IPR000668 GO:0006508|GO:0008234
Vvi18g0057 351 FunFam cysteine protease XCP2 27 350 - -
Vvi18g0057 351 SMART Inhibitor_I29_2 48 104 IPR013201 -
Vvi18g0057 351 Gene3D Cysteine proteinases 27 350 - -
Vvi18g0057 351 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 151 162 IPR000169 -
Vvi18g0057 351 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 44 343 IPR013128 GO:0008234
Vvi18g0057 351 CDD Peptidase_C1A 134 347 IPR039417 -
Vvi18g0057 351 PRINTS Papain cysteine protease (C1) family signature 151 166 IPR000668 GO:0006508|GO:0008234
Vvi18g0057 351 PRINTS Papain cysteine protease (C1) family signature 293 303 IPR000668 GO:0006508|GO:0008234
Vvi18g0057 351 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 308 327 IPR025661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0057 Vvi-Chr18 582284 583695 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0057 K16290 - vvi:100251307 725.702