LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr3g4375	ATGGCTTTTTTCTCCCCCAAAACACTTGTCCTTACCTGCTCCTTATGCTTATTTCTATCTTTAGCATTTGGACGTGATTTCTCCATCGTGGGCTATTCATCAGAGGACTTAAAGTCCATGGATAAGCTCATTGAACTCTTCGAATCATGGATGTCGAGACACGGCAAGATTTATGAGACCATTGAAGAAAAGCTACTCAGGTTCGAGGTCTTTAAGGATAATCTAAAGCACATTGATGATAGGAACAAGGTTGTCAGCAACTACTGGCTTGGTTTGAATGAGTTTGCTGATTTGAGCCATCAAGAGTTCAAGAACAAGTATCTTGGGCTAAAAGTTGACTTGTCTCAAAGGAGAGAGTCCTCAGAAGAAGAATTCACTTATAGAGATGTTGATTTGCCTAAGTCAGTTGATTGGAGAAAGAAAGGTGCTGTAACCCCGGTCAAGAATCAAGGTCAATGTGGTAGTTGCTGGGCATTTTCGACTGTTGCTGCGGTTGAAGGAATAAACCAAATTGTGACAGGGAATTTGACATCTTTGTCCGAGCAAGAATTAATCGACTGTGACACAACTTACAACAATGGTTGCAATGGGGGTCTAATGGACTATGCATTCTCCTTCATTGTAAAAAACGGTGGACTACATAAAGAGGAAGATTATCCTTACATTATGGAGGAAAGCACTTGTGAGATGAAAAAGGAAGTAAGTGAGGTTGTGACTATTAATGGATATCATGACGTGCCACAAAATAATGAACAAAGCTTATTGAAGGCACTTGCCAATCAACCACTCAGTGTGGCCATAGAGGCTTCAGGCAGAGATTTCCAGTTCTATAGTGGAGGTGTGTTTGATGGACATTGTGGAAGTGAGCTAGATCATGGTGTGTCAGCCGTTGGATATGGTACATCAAAGGGTTTGGATTACATTATAGTGAAGAATTCATGGGGAGCAAAGTGGGGTGAGAAAGGGTTTATTAGGATGAAGAGAAACATTGGAAAGTCTGAAGGGATTTGTGGACTCTACAAGATGGCTTCTTATCCCACTAAAAAGAAATAA	1053	0.4084	MAFFSPKTLVLTCSLCLFLSLAFGRDFSIVGYSSEDLKSMDKLIELFESWMSRHGKIYETIEEKLLRFEVFKDNLKHIDDRNKVVSNYWLGLNEFADLSHQEFKNKYLGLKVDLSQRRESSEEEFTYRDVDLPKSVDWRKKGAVTPVKNQGQCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELIDCDTTYNNGCNGGLMDYAFSFIVKNGGLHKEEDYPYIMEESTCEMKKEVSEVVTINGYHDVPQNNEQSLLKALANQPLSVAIEASGRDFQFYSGGVFDGHCGSELDHGVSAVGYGTSKGLDYIIVKNSWGAKWGEKGFIRMKRNIGKSEGICGLYKMASYPTKKK*	351

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr3g4375	350	ProSitePatterns	Eukaryotic thiol (cysteine) proteases asparagine active site.	307	326	IPR025661	-
	Mtr3g4375	350	PANTHER	-	24	348	-	-
	Mtr3g4375	350	Pfam	Papain family cysteine protease	132	346	IPR000668	GO:0006508\|GO:0008234
	Mtr3g4375	350	Gene3D	Cysteine proteinases	26	349	-	-
	Mtr3g4375	350	SUPERFAMILY	Cysteine proteinases	42	347	IPR038765	-
	Mtr3g4375	350	SMART	Inhibitor_I29_2	47	103	IPR013201	-
	Mtr3g4375	350	Pfam	Cathepsin propeptide inhibitor domain (I29)	47	103	IPR013201	-
	Mtr3g4375	350	PRINTS	Papain cysteine protease (C1) family signature	150	165	IPR000668	GO:0006508\|GO:0008234
	Mtr3g4375	350	PRINTS	Papain cysteine protease (C1) family signature	292	302	IPR000668	GO:0006508\|GO:0008234
	Mtr3g4375	350	PRINTS	Papain cysteine protease (C1) family signature	307	313	IPR000668	GO:0006508\|GO:0008234
	Mtr3g4375	350	SMART	pept_c1	132	347	IPR000668	GO:0006508\|GO:0008234
	Mtr3g4375	350	ProSitePatterns	Eukaryotic thiol (cysteine) proteases cysteine active site.	150	161	IPR000169	-
	Mtr3g4375	350	CDD	Peptidase_C1A	133	346	IPR039417	-
	Mtr3g4375	350	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	24	348	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr3g4375	Mtr-Chr3	57679043	57680627	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr3g4375	K16290		-	gmx:100788466	655.595

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr3g4375	3	57679043	57680627	Mtr3g4375	3	57679043	57680627	ECH