Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops10g02419 ATGAGTTGTTCGTGTTCCCTTTCACAATTGCTTGTTCTGATTCTCCTCTTAACTCCTTTGTCTCTGGCCTCTTCCTCCGACATCTCTGAACTCTTTGAAAGTTGGTGCAAGGAACATGGCAAAACATACTCTTCGGAAGAAGAGAAACGGTACAGGTTCAAAGTGTTCGAGGACAACTATGCCTTTGTCGCACAACACAACCAAATGGGAAATTTCAGTTTCACCCTTTCCCTCAACGCTTTTGCCGATCTCACCCACCATGAATTCAAGACCACTCGTTTGGGTCTTCCCCCTTCCTTGCTTAGATTCAACCATGTCCAGGATCAACAACTAGATGAATCCTTAGATGTTCCTTCTGAGATTGATTGGAGAAAGAGTGGCGCGGTTACTCCCGTCAAAGACCAAGGAAGCTGTGGTGCTTGTTGGTCATTCTCAGCTACAGGGGCTATTGAAGGTATAAATCAGATTGTCACTGGGTCTCTTACAAGCCTTTCTGAACAAGAACTGGTAGATTGTGATACAAGCTACAATAGTGGTTGTGATGGTGGACTCATGGACTATGCATACCAATTTGTCATTGATAACCAAGGGATTGATACTGAGGAAGATTATCCATATCAAGCTCGTCAACGGCTTTGCAACAAGGACAAGTTAAAAAGACGTGTTGTTACAATTGATGGCTATACTGATGTGCCTGCATATGATGAGAACAAGCTACTAAAGGCTGTTACAAACCAGCCTGTGAGCGTAGGCATATGTGGTAGTGCAAGAGCTTTCCAGTTATACTCAACGGGTATCTTCACCGGGCCATGTTCAACTGCTTTGGATCATGCAGTGTTGATAGTAGGATATGGTTCAGAAAATGGAGTAGATTATTGGATTGTAAAGAACTCATGGGGAGCACGTTGGGGAATGAATGGTTACATACACATGCTACGAAACAGTGGCAATTCAGCTGGGGTCTGTGGAATCAACACATTAGCTTCATATCCAACCAAGACCAGCCCTAATCCTCCTGTCCCACCTACCCCAGGTCCTGCAAAATGTAATCTGTTCACTTATTGTTTAGAAGGGGAAACATGTTGCTGTGCCAAGAGCCTTCTTGGAATATGCTTTTCATGGAAATGCTGTGGGTTAAATTCTGCTGTGTGTTGTAAGGACAAGCGCCACTGTTGCCCTCAAGATTATCCTGTTTGTGACACAAGAAAGGGCCAATGTCTCAAGAGAATTGCAAATGGGACGATAACAATGCCATCTGATAACGAAGGCCCTTACCATCAGCTAAGAGGTTGGAAATCTCATTGA 1305 0.4398 MSCSCSLSQLLVLILLLTPLSLASSSDISELFESWCKEHGKTYSSEEEKRYRFKVFEDNYAFVAQHNQMGNFSFTLSLNAFADLTHHEFKTTRLGLPPSLLRFNHVQDQQLDESLDVPSEIDWRKSGAVTPVKDQGSCGACWSFSATGAIEGINQIVTGSLTSLSEQELVDCDTSYNSGCDGGLMDYAYQFVIDNQGIDTEEDYPYQARQRLCNKDKLKRRVVTIDGYTDVPAYDENKLLKAVTNQPVSVGICGSARAFQLYSTGIFTGPCSTALDHAVLIVGYGSENGVDYWIVKNSWGARWGMNGYIHMLRNSGNSAGVCGINTLASYPTKTSPNPPVPPTPGPAKCNLFTYCLEGETCCCAKSLLGICFSWKCCGLNSAVCCKDKRHCCPQDYPVCDTRKGQCLKRIANGTITMPSDNEGPYHQLRGWKSH* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops10g02419 434 Gene3D Granulin 346 410 IPR037277 -
Rops10g02419 434 SMART GRAN_2 349 406 IPR000118 -
Rops10g02419 434 SUPERFAMILY Cysteine proteinases 27 332 IPR038765 -
Rops10g02419 434 Pfam Papain family cysteine protease 117 331 IPR000668 GO:0006508|GO:0008234
Rops10g02419 434 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 135 146 IPR000169 -
Rops10g02419 434 SMART pept_c1 117 332 IPR000668 GO:0006508|GO:0008234
Rops10g02419 434 PRINTS Papain cysteine protease (C1) family signature 277 287 IPR000668 GO:0006508|GO:0008234
Rops10g02419 434 PRINTS Papain cysteine protease (C1) family signature 135 150 IPR000668 GO:0006508|GO:0008234
Rops10g02419 434 PRINTS Papain cysteine protease (C1) family signature 292 298 IPR000668 GO:0006508|GO:0008234
Rops10g02419 434 SMART Inhibitor_I29_2 32 89 IPR013201 -
Rops10g02419 434 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 292 311 IPR025661 -
Rops10g02419 434 Gene3D Cysteine proteinases 14 334 - -
Rops10g02419 434 FunFam cysteine protease XCP2 12 334 - -
Rops10g02419 434 CDD Peptidase_C1A 118 331 IPR039417 -
Rops10g02419 434 Pfam Cathepsin propeptide inhibitor domain (I29) 32 89 IPR013201 -
Rops10g02419 434 SUPERFAMILY Granulin repeat 346 379 - -
Rops10g02419 434 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 275 285 IPR025660 -
Rops10g02419 434 FunFam Cysteine protease 1 346 409 - -
Rops10g02419 434 Pfam Granulin 360 407 IPR000118 -
Rops10g02419 434 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 326 IPR013128 GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops10g02419 Rops-Chr10 42398535 42401368 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops10g02419 - - gmx:100805596 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops10g02419 10 42398535 42401368 Rops10g02419 10 42398535 42401368 ECH