Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso4g0129 ATGGCTTTCTCCTTCTCCAAAGCACTTGTCCTTGCCTGCTCCTTCTGCTTATTTGCGTCTTTGGCTTTTGGACGCGATTTCTCCATTGTGGGCTATTCATCGGAGGACTTAAAGTCCATGGATAAGCTCATTGAACTCTTTGAATCATGGATGTCAAAACATGGCAAGATTTACCAAAGCATTGAGGAGAAGCTTCTTAGGTTCGAGATTTTCAAGGATAACCTAAAGCACATTGATGAGAGAAACAAGGTGGTCAGCAACTACTGGCTTGGCTTGAATGAGTTTGCTGATTTGAGCCACCAAGAGTTCAAGAACAAGTATCTGGGGCTTAAGGTGGACTACTCTCGAAGGAGAGAGTCTCCTGAAGAATTCACTTACAAAGATGTTGAATTGCCTAAGTCAGTGGATTGGAGAAAGAAAGGTGCTGTGGCCCCAGTCAAGAACCAAGGTTCATGTGGTAGCTGCTGGGCATTTTCCACTGTTGCAGCAGTTGAGGGTATAAACCAGATAGTCACGGGAAATTTGACATCACTGTCTGAGCAAGAGTTGATTGACTGTGACAGAACATACAACAATGGTTGCAATGGGGGTCTCATGGACTATGCATTCTCCTTTATTGTAGAAAACGGTGGACTCCACAAAGAGGAAGATTATCCTTACATTATGGAGGAAGGTACTTGCGAGATGACTAAGGAAGAAACCGAAGTTGTCACCATTAGCGGGTACCATGATGTGCCACAAAACAATGAACAGAGCCTATTGAAGGCACTTGCAAACCAACCCCTCAGTGTGGCCATAGAGGCTTCAGGCAGAGATTTCCAATTTTACAGTGGGGGTGTTTTCGACGGGCATTGCGGAAGTGACTTAGATCATGGTGTGGCAGCTGTTGGATACGGAACTGCGAAAGGTGTGGATTATATCATAGTGAAAAATTCATGGGGATCTAAGTGGGGAGAGAAAGGATACATAAGAATGAGGAGGAACATTGGAAAACCCGAGGGAATCTGCGGTATCTACAAGATGGCTTCTTATCCCACTAAGAAGAAATGCCCATTCTTCCTCATCCTTTCCCTCTTCTCTTGTATTCACATTTCAACAACTATAACCATGGCTTTCTCCTCCTCCAAGGCACTTTTCCTTGCCTGCTCTTTTTGCCTATTTGCATCTTTGGCTGTTGCTGGCGATTTCTCCATTGTGGGCTATTCATCAGAGGACTTAAAGTCCATGGATAAGCTCATTGAACTCTTTGAGTCATGGATGTCAAGACATGGCAAGATTTACCAAAGCATTGAGGAGAAGCTGCACAGGTTCGATATTTTCAAGGACAACCTAAAGCACATTGATGAGAGAAACAAGGTGGTCAGCAACTACTGGCTTGGCTTGAATGAGTTTGCTGATTTGAGCCACCAAGAGTTCAAGAACAAATATCTCGGGCTTAAGGTAGACTACTCTAGAAGGAGAGAGTCCCCTGAAGAATTCACTTACAAAGATTTTGAATTGCCTAAGTCAGTGGATTGGAGAAAGAAAGGTGCCGTAACCCAAGTCAAGAACCAAGGTTCATGTGGTAGCTGCTGGGCATTTTCCACTGTTGCAGCAGTTGAGGGAATAAACCAGATTGTGACCGGAAATTTAACATCACTGTCTGAGCAAGAGTTGATTGACTGTGACAGAACATACAACAATGGTTGCAATGGGGGTCTCATGGACTATGCCTTCTCCTTTATTGTAGAAAACGGTGGACTCCACAAAGAGGAAGATTATCCTTACATTATGGAGGAAGGTACTTGCGAGATGACTAAGGAAGAAACTGAAGTTGTTACTATTAGCGGATACCATGATGTGCCACAAAACAATGAACAGAGCCTATTGAAGGCACTTGTAAACCAACCCCTCAGTGTGGCCATAGAGGCTTCAGGCAGAGATTTCCAATTTTACAGTGGGGGTGTTTTCGATGGGCATTGTGGAAGTGACCTAGATCACGGTGTGGCTGCTGTTGGATATGGAACTTCGAAGGGAGTGGATTATATCATAGTGAAAAATTCATGGGGATCTAAGTGGGGAGAGAAAGGATACATAAGAATGAGGAGGAACATTGGAAAACCCGAGGGAATCTGCGGTATCTATAAGATGGCTTCTTATCCCACTAAGAAGAAATAA 2157 0.439 MAFSFSKALVLACSFCLFASLAFGRDFSIVGYSSEDLKSMDKLIELFESWMSKHGKIYQSIEEKLLRFEIFKDNLKHIDERNKVVSNYWLGLNEFADLSHQEFKNKYLGLKVDYSRRRESPEEFTYKDVELPKSVDWRKKGAVAPVKNQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELIDCDRTYNNGCNGGLMDYAFSFIVENGGLHKEEDYPYIMEEGTCEMTKEETEVVTISGYHDVPQNNEQSLLKALANQPLSVAIEASGRDFQFYSGGVFDGHCGSDLDHGVAAVGYGTAKGVDYIIVKNSWGSKWGEKGYIRMRRNIGKPEGICGIYKMASYPTKKKCPFFLILSLFSCIHISTTITMAFSSSKALFLACSFCLFASLAVAGDFSIVGYSSEDLKSMDKLIELFESWMSRHGKIYQSIEEKLHRFDIFKDNLKHIDERNKVVSNYWLGLNEFADLSHQEFKNKYLGLKVDYSRRRESPEEFTYKDFELPKSVDWRKKGAVTQVKNQGSCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELIDCDRTYNNGCNGGLMDYAFSFIVENGGLHKEEDYPYIMEEGTCEMTKEETEVVTISGYHDVPQNNEQSLLKALVNQPLSVAIEASGRDFQFYSGGVFDGHCGSDLDHGVAAVGYGTSKGVDYIIVKNSWGSKWGEKGYIRMRRNIGKPEGICGIYKMASYPTKKK* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso4g0129 718 SUPERFAMILY Cysteine proteinases 411 715 IPR038765 -
Gso4g0129 718 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 149 160 IPR000169 -
Gso4g0129 718 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 393 716 - -
Gso4g0129 718 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 25 347 - -
Gso4g0129 718 PRINTS Papain cysteine protease (C1) family signature 518 533 IPR000668 GO:0006508|GO:0008234
Gso4g0129 718 PRINTS Papain cysteine protease (C1) family signature 660 670 IPR000668 GO:0006508|GO:0008234
Gso4g0129 718 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 658 668 IPR025660 -
Gso4g0129 718 CDD Peptidase_C1A 132 345 IPR039417 -
Gso4g0129 718 Gene3D Cysteine proteinases 26 348 - -
Gso4g0129 718 Gene3D Cysteine proteinases 395 717 - -
Gso4g0129 718 Pfam Papain family cysteine protease 131 346 IPR000668 GO:0006508|GO:0008234
Gso4g0129 718 Pfam Papain family cysteine protease 500 715 IPR000668 GO:0006508|GO:0008234
Gso4g0129 718 SMART pept_c1 500 715 IPR000668 GO:0006508|GO:0008234
Gso4g0129 718 SMART pept_c1 131 346 IPR000668 GO:0006508|GO:0008234
Gso4g0129 718 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 518 529 IPR000169 -
Gso4g0129 718 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 289 299 IPR025660 -
Gso4g0129 718 SMART Inhibitor_I29_2 416 472 IPR013201 -
Gso4g0129 718 SMART Inhibitor_I29_2 47 103 IPR013201 -
Gso4g0129 718 Pfam Cathepsin propeptide inhibitor domain (I29) 416 472 IPR013201 -
Gso4g0129 718 Pfam Cathepsin propeptide inhibitor domain (I29) 47 103 IPR013201 -
Gso4g0129 718 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 306 325 IPR025661 -
Gso4g0129 718 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 675 694 IPR025661 -
Gso4g0129 718 PANTHER - 393 716 - -
Gso4g0129 718 PANTHER - 25 347 - -
Gso4g0129 718 CDD Peptidase_C1A 501 714 IPR039417 -
Gso4g0129 718 SUPERFAMILY Cysteine proteinases 42 346 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso4g0129 Gso-Chr4 1128968 1134657 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso4g0129 K16290 - gmx:100788466 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0129 4 1128968 1134657 Gso4g0129 4 1128968 1134657 ECH
Gso4g0129 4 1128968 1134657 Gso6g0117 6 1112589 1114280 GST