Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi08g1992 ATGAGAGCGATGGTAGCTATCCCTCGTTGGCTTTCCATAACCCCAAATCCTGCAAAGGGAAGGCCTCCCACCATGAGTGTCTTTTCCTTCTCCTTTATGCTCACTTTCGTTCTGCTTTTTACTTCTTTCTCTTTCTCTTTCTCCTCTTCTGCCGACACCTTTGAACTCTTTGAAAGCTGGTGCGAGCAATATGGCAAAACCTACTCTTCCGAAGAGGAGAAACTCTACAGGTTCGGAGTATTCGAGGACAATTATGCCTTCGTTGCTAAACACAATGAAATGGGCAATTCTACTTATACACTCTCGCTCAATGCCTTCGCCGATCTCTCCAACCATGAATTCAAGGTCTCTCGTTTGGGTCTATCCCCTGCCTTGCTTAGATTCGACCATCCGCCGGTTCAGCAACCCGATAAACTCCTTCTCCTAGATAATCTTCCTTCTGAGATTGATTGGAGAAAGAAAGGGGCGGTTACTCAGGTCAAAGACCAAGGAAGCTGTGGTGCTTGTTGGTCGTTCTCAGCTACTGGAGCTATCGAAGGTATAAATAAGATTGTCACAGGTTCTCTTGTTAGCCTCTCTGAACAAGAATTGGTAGATTGTGATAGAAAATACAACAGCGGCTGTGAGGGTGGACTCATGGACTACGCTTATCAATTTGTTATTGATAACCATGGGATTGACACTGAGGAAGATTACCCATACCAAGCTCGTGAAAGGTCTTGCTTTAAGGATAAGTTAAGAAGGCGTGTTGTTACAATTGATGGTTATACTGATGTGCCCTCAAATAATGAGAAACAGCTACTAAAGGCTGTTGCATCCCAGCCTGTCAGTGTTGGCATATGTGGCAGTGATAGAGCTTTTCAGTTATACTCAAAGGGTATTTTCACTGGCCCATGTTCAACCTCTTTGGATCATGCAGTGTTGATTGTAGGATATAGTTCAGAAAATGGAGATGATTATTGGATTGTAAAGAACTCATGGGGAACTCATTGGGGAATCAATGGTTACATGCACATGCAGCGAAACAATGGCAACTCCCAAGGGTTATGTGGAATCAACATGCTAGCTTCGTATCCAACCAAGACAAGCCCAAATCCTCCTTCTCCATCTCCCCCAGCTCCGACAAAGTGTAATCTGTTTACTTATTGTTCAGAAGGGGAAACCTGTTGCTGTGTCAGGCGCCTTCTTGGAATATGCTTTTCATGGAAATGCTGTGGATTAACTTCGGCCGTATGTTGTAAGGACAATCGCCACTGCTGCCCTCACAATTATCCTGTTTGTGATACAAGAAGGGGACAATGTCTTCAGAGAACTGCAAATGTGACCAGACCAAGGATACATGAGAACGAAGGCTCTTTTCAAAAGACAAATGGTTGGAAATCTCACTAG 1389 0.4413 MRAMVAIPRWLSITPNPAKGRPPTMSVFSFSFMLTFVLLFTSFSFSFSSSADTFELFESWCEQYGKTYSSEEEKLYRFGVFEDNYAFVAKHNEMGNSTYTLSLNAFADLSNHEFKVSRLGLSPALLRFDHPPVQQPDKLLLLDNLPSEIDWRKKGAVTQVKDQGSCGACWSFSATGAIEGINKIVTGSLVSLSEQELVDCDRKYNSGCEGGLMDYAYQFVIDNHGIDTEEDYPYQARERSCFKDKLRRRVVTIDGYTDVPSNNEKQLLKAVASQPVSVGICGSDRAFQLYSKGIFTGPCSTSLDHAVLIVGYSSENGDDYWIVKNSWGTHWGINGYMHMQRNNGNSQGLCGINMLASYPTKTSPNPPSPSPPAPTKCNLFTYCSEGETCCCVRRLLGICFSWKCCGLTSAVCCKDNRHCCPHNYPVCDTRRGQCLQRTANVTRPRIHENEGSFQKTNGWKSH 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi08g1992 462 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 320 339 IPR025661 -
Glsi08g1992 462 Gene3D Cysteine proteinases 41 362 - -
Glsi08g1992 462 FunFam Cysteine protease 1 374 437 - -
Glsi08g1992 462 SMART GRAN_2 377 434 IPR000118 -
Glsi08g1992 462 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 303 313 IPR025660 -
Glsi08g1992 462 Gene3D Granulin 375 448 IPR037277 -
Glsi08g1992 462 SMART Inhibitor_I29_2 57 114 IPR013201 -
Glsi08g1992 462 Pfam Cathepsin propeptide inhibitor domain (I29) 57 114 IPR013201 -
Glsi08g1992 462 PRINTS Papain cysteine protease (C1) family signature 305 315 IPR000668 GO:0006508|GO:0008234
Glsi08g1992 462 PRINTS Papain cysteine protease (C1) family signature 163 178 IPR000668 GO:0006508|GO:0008234
Glsi08g1992 462 PRINTS Papain cysteine protease (C1) family signature 320 326 IPR000668 GO:0006508|GO:0008234
Glsi08g1992 462 SUPERFAMILY Granulin repeat 374 407 - -
Glsi08g1992 462 CDD Peptidase_C1A 146 359 IPR039417 -
Glsi08g1992 462 FunFam cysteine protease XCP2 37 362 - -
Glsi08g1992 462 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 51 358 IPR013128 GO:0008234
Glsi08g1992 462 SUPERFAMILY Cysteine proteinases 51 360 IPR038765 -
Glsi08g1992 462 Pfam Granulin 388 435 IPR000118 -
Glsi08g1992 462 SMART pept_c1 145 360 IPR000668 GO:0006508|GO:0008234
Glsi08g1992 462 Pfam Papain family cysteine protease 145 359 IPR000668 GO:0006508|GO:0008234
Glsi08g1992 462 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 163 174 IPR000169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi08g1992 Glsi-ChrGlsi08 14030280 14037478 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi08g1992 08 14030280 14037478 Glsi08g1992 08 14030280 14037478 ECH