Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0062 ATGGAAATGTCCCAGAAATTTTACGAATCCATGAAAGAATGTGCATCGCTCCGGTCGATTCCCATTGCCCGGAAACTTCATGCCCAGCTCATATTTATGGGGCTGAAGTCTTCAATTTTCTTGCAAAATCATCTATTGAATATGTACTCCAATTGTGGATTGATTAGTGACGCTTATCGGGTTTTTGGTGGCATCATGTTTCCTAATGTTTATAGTTGGAATACGATGATCAGTGGGTTTGCTGATTCGGGTCAGATGAGGGAAGCGGAGAAGTTGTTTGAGAAAATGCCCGAGAGAGACTCCGTTTCTTGGAACTCAATGATGTCGGGTTATTTTCATAATGGGGAACTGGAGGCTACTATAAAGGCTTCTGGAAGCCTTGGATACTTGAAATTAGCTTTGCAATTGCATGGTTTTGCAGAGAAATTTGATTTTGGAATAGACACTTGTGTTGAAACTTCAGTTCTTGATATGTACATCAAGTGTGGTGCAATGGATTTCGCTCAGAAAGTGTTTTGTAGGACCCCGAATCCAAGTTTGTTTTGTTGGAATAGTATGATTTATGGTTATTCAAAATATGGCAGCGTTAAAAAGGCTCTTGAGTTGTTTGCTAAAATGCCTGAGCGCGACACTGTTTCTTGGAATACGATGATTTCAATCTTGTCGCAACATGGGTTTGGCGCTGAAACTCTTAATACGTTCCTTGAGATGTGGAACCAAGGTTTTAGACCTAATTCCATGACATATGCTAGTGTTCTTAGTGCGTGCACCAGCATTTATGATCTGGAATGGGGTGCACATCTGCATGCACGGATTGTTCGCATGGAACCATGTCTTGATGTGTATGCAGGGTGCGGTTTGATTGATATGTATGCAAAATGTGGACGCTTGGAATCTGCAAGGCAGGTATTTGATGGCTTAACTGAGCATAATGCAGTCTCTTGGACCTCTTTAATTGGGGGAGTTGCACAGGCTGGGTTTCAAGAAGAAGCTTTGGTATTATTTAATCAAATGAGAGAGGTGCCTGTGGCTTCGGATCAGTTCACTCTTGCAACTGTTCTTGGAGTTTGTTTGAGTCAAAAGGATATTTCTATTGGGGAACAGCTCCATGCACATACGATCACTCGTGGACTGGATTCTTCTGTTCCTGTGGCAAATGCTCTTGTTACAATGTATGCGAAGTGTGGAGATGTTTGGAAAGCAAATCATGCATTTGAGTTGATGCCAATAAGAGATATAATTTCATGGACTGCAATGATTACTGCATTTTCTCAGGCTGGTGATGTTGAAAAAGCCCGAGAATATTTTGATAAAATGCCAGAGCGGAATGTAATATCCTGGAACTCAATGTTAGCCACATATATGCAACGCGGGTACTGGGAAGAGGGTCTCAAAGTATACATCCAGATGCTAAGGGAAGGGGTTAAGACAGATTGGATCACTTTTTCAACTTCAATCAGTGCCTGTGCTGATTTGGCAGTACTCATACTTGGGAATCAAATTTTAGCTCAAGCTGAAAAACTAGGGTTCAGTTCTAATGTTTCAGTTGCAAATAGTGTTGTTACCATGTATTCAAGATGTGGGCAGATTGAAGAAGCACAGAAAATGTTTAGTTCAATTGTTATGAAGAATTTGGTTTCTTGGAATGCAATGATGGCAGGATATGCTCAAAATGGTCAAGGTCGGAAAGTTATCGAGATCTTTGAGAAAATGTTAAATATAGGAAATGTGCCTGATCAGATAAGTTATGTATCTGTTCTTTCAGGTTGTAGCCATTCGGGATTTGTTTCAGAAGGGCAATATTACTTCCTGTCTATGACTAAAGATCATGGCATCTCTCCAATGAGCGAGCATTTTGTATGCATGGTAGATTTACTTGGCCGGGCTGGCCAGTTAGAGCAGGCTAAAAATTTGATCAATCAAATGCCCTTTAAACCGAATGCTGCCATTTGGGGAGCCCTGCTTGCTGCTTGCCGGATCCATGGCAATACAAAATTAGCAGAACTTGCAGTGAAGAATTTGCTTGAGTTGGATGCAGAAGGACCTGGAAGTTATTGTCTTCTAGCCAATATATATTCGGAGTCCGGAAAGATACAAGGTGTTACAAATGTGAGAAAACTGATGAGAGACAAAGGAGTCCGGAAGAATCCTGGTTGTAGCTGGATTGAGGTTGATAATAGGGTACATGTCTTTACTGTAGATGACACAAATCATCCACAAATCAAGGATGTCCATAGAATGTTAGAGGAGATTATAAAGAAGATAGAAGAAATTAAAAACTATGCCAATGTGATGAATTCTGGCAGATCTCATAATTACCATAGTGAGAAGCTTGCTGTGCCACTTCGATTGATTAGTTTGCCTGCTTGA 2370 0.4076 MEMSQKFYESMKECASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPGCSWIEVDNRVHVFTVDDTNHPQIKDVHRMLEEIIKKIEEIKNYANVMNSGRSHNYHSEKLAVPLRLISLPA* 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0062 789 Gene3D Tetratricopeptide repeat domain 596 721 IPR011990 GO:0005515
Vvi18g0062 789 FunFam Pentatricopeptide repeat-containing protein isoform A 129 264 - -
Vvi18g0062 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Vvi18g0062 789 SUPERFAMILY TPR-like 285 574 IPR011990 GO:0005515
Vvi18g0062 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
Vvi18g0062 789 FunFam Pentatricopeptide repeat-containing protein isoform A 369 494 - -
Vvi18g0062 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Vvi18g0062 789 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 265 364 - -
Vvi18g0062 789 Pfam PPR repeat family 442 490 IPR002885 -
Vvi18g0062 789 Pfam PPR repeat family 543 591 IPR002885 -
Vvi18g0062 789 Pfam PPR repeat family 210 256 IPR002885 -
Vvi18g0062 789 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 11 115 IPR046960 GO:0003723|GO:0009451
Vvi18g0062 789 Pfam E motif 661 723 IPR046848 -
Vvi18g0062 789 Pfam PPR repeat 67 96 IPR002885 -
Vvi18g0062 789 Pfam PPR repeat 287 309 IPR002885 -
Vvi18g0062 789 Pfam PPR repeat 386 409 IPR002885 -
Vvi18g0062 789 Pfam PPR repeat 313 340 IPR002885 -
Vvi18g0062 789 Pfam PPR repeat 619 642 IPR002885 -
Vvi18g0062 789 Pfam PPR repeat 102 118 IPR002885 -
Vvi18g0062 789 Pfam PPR repeat 182 209 IPR002885 -
Vvi18g0062 789 Gene3D Tetratricopeptide repeat domain 369 494 IPR011990 GO:0005515
Vvi18g0062 789 Gene3D Tetratricopeptide repeat domain 495 595 IPR011990 GO:0005515
Vvi18g0062 789 Gene3D Tetratricopeptide repeat domain 2 122 IPR011990 GO:0005515
Vvi18g0062 789 Gene3D Tetratricopeptide repeat domain 266 368 IPR011990 GO:0005515
Vvi18g0062 789 Gene3D Tetratricopeptide repeat domain 123 265 IPR011990 GO:0005515
Vvi18g0062 789 FunFam Pentatricopeptide repeat-containing protein mitochondrial 496 607 - -
Vvi18g0062 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Vvi18g0062 789 NCBIfam pentatricopeptide repeat 546 579 IPR002885 -
Vvi18g0062 789 NCBIfam pentatricopeptide repeat 212 245 IPR002885 -
Vvi18g0062 789 NCBIfam pentatricopeptide repeat 414 444 IPR002885 -
Vvi18g0062 789 NCBIfam pentatricopeptide repeat 71 100 IPR002885 -
Vvi18g0062 789 NCBIfam pentatricopeptide repeat 181 210 IPR002885 -
Vvi18g0062 789 NCBIfam pentatricopeptide repeat 445 478 IPR002885 -
Vvi18g0062 789 FunFam Pentatricopeptide (PPR) repeat-containing protein 608 767 - -
Vvi18g0062 789 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0062 Vvi-Chr18 602662 605100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0062 4 786 Glycoside Hydrolase AT3G49170 31.931 1.87e-135 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0062 - - vvi:100249582 1569.67