Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g3004 ATGGACGTTCGCGACATGGCATACCGTTACTTAACCCAACTAAACCACACTTCCGCCACTCAAACCATCGCACGTGCCGTTCATGCACACATCCTCATCTCCGGTTTCAAACCAAACACTTTCATCCTCAACCGTCTCATCAACTTCTACTGCAAATCCTCCAACATCACTTATGCTCGCAAACTGTTCGATAAAATTCCCAAACCAGATATAGTCGCAAGAACCACCCTTCTCTCTGCATATTCCTCCTCCGGTGATGTCAAACTCGCCCGACAACTCTTCAACGCCATCCCACTCACTATTCGCGATACCGTCAGTTACAATGCCATGATCACTGCCTACTCTCACGGTAATGATGGCCACGCTGCACTCAATCTCTTTGTTCAAATGAGAAGACAGGGCTTTTTACCCGATCCTTTTACGTTCTCCAGTGTGCTTTCTGCTCTCTCCATCATAGCAGACGAGGAGTGGCATTGTCAAATGTTGCATTGTGAGGTTATCAAATGGGGAACATTGTCTATACCTTCTGTATTGAATGCGCTTTTGAGTTGCTATGTTTGTTGTGCTTCTTCGCCTTTGGTCAAATCATCTCAGTTGATGGCTTCTGCTAGGAAGGTTTTTGATGAGGCTCCTAAGAATCAGGTGTATGAACCCTCATGGACTACCATGATTGCTGGTTATGTGAGGAATGATGATCTCGCTGCAGCGCGTGAGCTTCTTGATGGAATGACTTACCCTATTGATGTTGCTTGGAATGCCATGATTTCTGGTTATGTTCGGCGTGGTTTATACGAAGAGGCGTTTGACACGTTCAGGAGAATGCATTCGATGGGAATGCAGGAGGATGAGTATACTTACACCAGTTTGCTTAGTGCCTGTGCTTCTTGTAGTGCGAGGAGGGGGATGTTCAATTATGGAAGACAGGTGCATGGTTATATTCTCAGGACAGTGGTTGAGCCATCACAGCATTTTGTTTTGTCTGTTAGCAATGCTTTGATTACTTTCTACACTAAGTACGGTAGAATGATGGAGGCGAGGCGAGTCTTTGATAGAATGCCTGTGAGAGATATTGTTTCCTGGAATGCTGTTTTGTCGGGGTATGTTAATGCACGACGCATTGAGGAAGCTAATTCTATTTTCAGGGAGATGCCAGAGAGGAACGTGCTGACTTGGACAGTGATGATATCTGGTTTGGCGCAAAATGGTTTTGGAGAAGAAGGTTTGAAGCTGTTCAACCAGATGAAGTTAGAGGGACTAGAACCATGTGATTATGCTTACGCTGGGGCGATTACATCTTGTGCTGTTCTTGGTTCGTTGGACAATGGGCAACAAATTCATTCTCAAGTAATTCGATTGGGTCATGATTCAGGCCTCTCCGCCGGCAATGCGCTGATTACCATGTATGCGAGGTGTGGTGTTGTTGAATCTGCTGAATCCGTGTTTCTCACAATGCCTTATGTGGATTCAGTATCTTGGAATGCCATGATTGCAGCTCTTGCACAACATGGACATGGTGTCCAAGCCATTGAGCTTTTTGAACAGATGTTGAAGGAGGATATTTTACCTGATAGAATAACTTTCCTCACAATACTTACTGCTTGCAACCATGCAGGCTTGGTCAAAGAGGCACACCATTATTTTGATACAATGTGCACTCGTTACAGTATAACCCCAGGAGAGGATCATTATGCCCGTTTGATTGATTTGTTATGTCGTGCGGGTATGTTCTCAGAAGCAAAGAGTGTAATCAAAGCAATGCCTTTTGAGCCCGGTGCACCAATTTGGGAAGCTTTTCTTGCTGGTTGCCGGATTCACGGGAACATTGAATTGGGCATTCAAGCTGCTGACCGACTCCTTGAGCTTATTCCACAGCAAGATGGAACCTACATAATTCTTTCCAATATGTATGCTGCTTTAGGTCAGTGGGACGAAGTGGCCAGGGTGAGGTTACTGATGAGGGAACGGGGAGTGAAAAAGGAACCTGGTTGTAGTTGGGTTGAGGTTGAAAACATGGTCCATGTCTTTTTGGCTGATGATGCTAGGCACCCTGAGGTACAAGCGGTGTACACATATCTGGAGCAACTGGTACATGAAATGAGGAAATTGGGGTATATTCCTGATACAAAGTTTGTACTGCATGATATGGAATCTGAGCACAAAGAACATGCCTTGTCTACCCACAGTGAAAAGCTGGCTGTTGCATACGGAATTATGAAGCTTCCTTTAGGAGCTACAATTCGTGTTTTCAAAAATTTGAGAATATGTGGAGACTGTCACAATGCATTCAAATTTATTTCCAAAGTAGTGGCAAGAGAGATAGTTGTGAGAGATAGGAAGAGGTTTCATCATTTTAAAAATGGAGAATGTTCTTGCGGCAACTACTGGTAG 2388 0.4447 MDVRDMAYRYLTQLNHTSATQTIARAVHAHILISGFKPNTFILNRLINFYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGDVKLARQLFNAIPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMRRQGFLPDPFTFSSVLSALSIIADEEWHCQMLHCEVIKWGTLSIPSVLNALLSCYVCCASSPLVKSSQLMASARKVFDEAPKNQVYEPSWTTMIAGYVRNDDLAAARELLDGMTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGMQEDEYTYTSLLSACASCSARRGMFNYGRQVHGYILRTVVEPSQHFVLSVSNALITFYTKYGRMMEARRVFDRMPVRDIVSWNAVLSGYVNARRIEEANSIFREMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAITSCAVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYARCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVQAIELFEQMLKEDILPDRITFLTILTACNHAGLVKEAHHYFDTMCTRYSITPGEDHYARLIDLLCRAGMFSEAKSVIKAMPFEPGAPIWEAFLAGCRIHGNIELGIQAADRLLELIPQQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLADDARHPEVQAVYTYLEQLVHEMRKLGYIPDTKFVLHDMESEHKEHALSTHSEKLAVAYGIMKLPLGATIRVFKNLRICGDCHNAFKFISKVVAREIVVRDRKRFHHFKNGECSCGNYW* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g3004 795 TIGRFAM PPR: pentatricopeptide repeat domain 219 243 IPR002885 -
Psa6g3004 795 TIGRFAM PPR: pentatricopeptide repeat domain 358 388 IPR002885 -
Psa6g3004 795 TIGRFAM PPR: pentatricopeptide repeat domain 330 358 IPR002885 -
Psa6g3004 795 TIGRFAM PPR: pentatricopeptide repeat domain 390 421 IPR002885 -
Psa6g3004 795 TIGRFAM PPR: pentatricopeptide repeat domain 490 523 IPR002885 -
Psa6g3004 795 TIGRFAM PPR: pentatricopeptide repeat domain 249 279 IPR002885 -
Psa6g3004 795 TIGRFAM PPR: pentatricopeptide repeat domain 105 138 IPR002885 -
Psa6g3004 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Psa6g3004 795 Gene3D Tetratricopeptide repeat domain 159 315 IPR011990 GO:0005515
Psa6g3004 795 Gene3D Tetratricopeptide repeat domain 462 734 IPR011990 GO:0005515
Psa6g3004 795 Pfam E motif 605 667 IPR046848 -
Psa6g3004 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Psa6g3004 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 103 137 IPR002885 -
Psa6g3004 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 522 IPR002885 -
Psa6g3004 795 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 356 386 IPR002885 -
Psa6g3004 795 PANTHER - 7 789 - -
Psa6g3004 795 Gene3D Tetratricopeptide repeat domain 316 451 IPR011990 GO:0005515
Psa6g3004 795 Gene3D Tetratricopeptide repeat domain 4 158 IPR011990 GO:0005515
Psa6g3004 795 Pfam PPR repeat 75 95 IPR002885 -
Psa6g3004 795 Pfam PPR repeat 462 484 IPR002885 -
Psa6g3004 795 Pfam PPR repeat 565 586 IPR002885 -
Psa6g3004 795 Pfam PPR repeat 219 243 IPR002885 -
Psa6g3004 795 Pfam PPR repeat 43 66 IPR002885 -
Psa6g3004 795 Pfam PPR repeat 390 419 IPR002885 -
Psa6g3004 795 PANTHER BNACNNG04730D PROTEIN 7 789 - -
Psa6g3004 795 Pfam PPR repeat family 103 149 IPR002885 -
Psa6g3004 795 Pfam PPR repeat family 488 534 IPR002885 -
Psa6g3004 795 Pfam PPR repeat family 249 294 IPR002885 -
Psa6g3004 795 Pfam PPR repeat family 356 388 IPR002885 -
Psa6g3004 795 Pfam DYW family of nucleic acid deaminases 703 795 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g3004 Psa-Chr6 252404065 252408366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g3004 103 795 Glycoside Hydrolase AT3G49170 34.621 5.08e-142 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g3004 - - mtr:MTR_1g073300 1493.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g3004 6 252404065 252408366 Psa6g3004 6 252404065 252408366 ECH