Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g04448 ATGAATTTTCTCACATTCATTCCCCAATTGCTATCTCTAATCCTCGTTTTCTCTCTTTCAATTTTCGTCTCTTCTACAACCACTTCTGAACTCTTCGAAGAGTGGAGCAAAACCCATGGCAAAACATACGCTTCTAACGAAGAGAAGCTTTACAGGTTCAAGATATTCGAAGACAATTATGCGTTCGTCACACAACACAACCAAATGGGAAATTCCAGCTATACCCTCTCCCTCAATGCTTTCGCAGATCTCACTCACCATGAATTCAAAACCACTCGTCTCGGTTTGCCTCCGTCGTTGCTGCGATTGAAATTCAACGAGTTTCAGGATCAACCGGTTGATGATGATAATGATCTTGTGGAAGTCCCGTCGGAGGTTGATTGGAGAGAAAGTGGTGCTGTTAGTAACGTCAAAGACCAAGGAAGCTGCGGTGCTTGTTGGTCATTTTCAGCTACCGGGGCTATAGAAGGGATAAATAAAATTGTGACAGGGTCTCTTGTAAGTCTTTCTGAACAAGAACTGGTAGATTGTGATACAAAGTATAATAGTGGTTGTGGTGGCGGACTCATGGATTATGCATATCAATTTATCATTGACAACAAAGGTATCGACACTGAAGAAGATTACCCGTATCAAGGTCGTCAAGTACCTTGCGAAAAAGGCAAGTTAAAAAGGCGTGTTGTTACGATTGATGGTTATACTGATGTGCCTTCGAAGGATGAGAAAAAACTACTAAAAGCTGTTGCAGTCCAACCTGTTAGCGTAGGCATATGTGGTAGTGCAAGGGCTTTCCAGATGTACTCAAAGGGTATCTTCACTGGACCTTGTTCAACTTCTCTTGATCACGCGGTGTTGATTGTAGGATATGGTTCGGAGAATGGAGTAGATTATTGGATTGTGAAGAATTCGTGGGGAAAATATTGGGGAATGAATGGTTACATACACATATTACGAAACACGGAAGATTCTGGAGGGTTATGTGGAATCAACATGTTAGCTTCATATCCTACCAAGACTAGCCCTAATCCTCCTCTCCCACCTCCGCCAGGTCCTGTAAGGTGTAATCTGTTTACTCACTGTTCAGAAGGGGAAACATGTTGCTGTGCCTGGAAATTTCTTGGAATATGTTTCTCTTGGAAATGTTGTGGTGTAAATTCTGCCGTGTGTTGTAAGGATAAGCGTCATTGTTGTCCACAAGATTATCCGATTTGCGACACTAGAAATAGCCAGTGTCTTAAGAGAGTTGCAAATGGAACGATAACAATGGCATCTGATAAAGAAGATACTTTCAATCAGACAAGAGATTGGAGATCTCAATGA 1320 0.4189 MNFLTFIPQLLSLILVFSLSIFVSSTTTSELFEEWSKTHGKTYASNEEKLYRFKIFEDNYAFVTQHNQMGNSSYTLSLNAFADLTHHEFKTTRLGLPPSLLRLKFNEFQDQPVDDDNDLVEVPSEVDWRESGAVSNVKDQGSCGACWSFSATGAIEGINKIVTGSLVSLSEQELVDCDTKYNSGCGGGLMDYAYQFIIDNKGIDTEEDYPYQGRQVPCEKGKLKRRVVTIDGYTDVPSKDEKKLLKAVAVQPVSVGICGSARAFQMYSKGIFTGPCSTSLDHAVLIVGYGSENGVDYWIVKNSWGKYWGMNGYIHILRNTEDSGGLCGINMLASYPTKTSPNPPLPPPPGPVRCNLFTHCSEGETCCCAWKFLGICFSWKCCGVNSAVCCKDKRHCCPQDYPICDTRNSQCLKRVANGTITMASDKEDTFNQTRDWRSQ 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g04448 439 FunFam Cysteine protease 1 351 414 - -
Vifa2g04448 439 SUPERFAMILY Cysteine proteinases 26 337 IPR038765 -
Vifa2g04448 439 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 297 316 IPR025661 -
Vifa2g04448 439 Pfam Granulin 365 412 IPR000118 -
Vifa2g04448 439 Pfam Cathepsin propeptide inhibitor domain (I29) 32 89 IPR013201 -
Vifa2g04448 439 Pfam Papain family cysteine protease 122 336 IPR000668 GO:0006508|GO:0008234
Vifa2g04448 439 SUPERFAMILY Granulin repeat 351 384 - -
Vifa2g04448 439 SMART GRAN_2 354 411 IPR000118 -
Vifa2g04448 439 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 280 290 IPR025660 -
Vifa2g04448 439 Gene3D Cysteine proteinases 14 339 - -
Vifa2g04448 439 Gene3D Granulin 351 420 IPR037277 -
Vifa2g04448 439 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 26 331 IPR013128 GO:0008234
Vifa2g04448 439 SMART Inhibitor_I29_2 32 89 IPR013201 -
Vifa2g04448 439 PRINTS Papain cysteine protease (C1) family signature 282 292 IPR000668 GO:0006508|GO:0008234
Vifa2g04448 439 PRINTS Papain cysteine protease (C1) family signature 140 155 IPR000668 GO:0006508|GO:0008234
Vifa2g04448 439 PRINTS Papain cysteine protease (C1) family signature 297 303 IPR000668 GO:0006508|GO:0008234
Vifa2g04448 439 SMART pept_c1 122 337 IPR000668 GO:0006508|GO:0008234
Vifa2g04448 439 CDD Peptidase_C1A 123 336 IPR039417 -
Vifa2g04448 439 FunFam cysteine protease XCP2 12 339 - -
Vifa2g04448 439 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 140 151 IPR000169 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g04448 Vifa-Chr2 1304980520 1304983456 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g04448 - - tpra:123897636 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g04448 2 1304980520 1304983456 Vifa2g04448 2 1304980520 1304983456 ECH