Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0542 . . . . . . Aed11g1657 . . . . . . . . . . . Apr7g0654 . . . Bach4g00226 . . . Bva08g00267 . Car08g00274 . Cca06g01730 . . . . . . . . . . . . . . . . . . . . . . Lal23g1212 . . . . . . Lapu2g00323 . . . . . . . . . . . Lja2g0067 . Mal6g1623 . Mepo5g00435 . Mesa17g00447 . . . Mtr5g0375 . Phac2g00558 . . . . . Psa2g4095 . Pste1g00734 . . . . . Pumo8g02238 . Pvu2g0619 . Rops1g02103 . Seca10g00423 . . . Ssu2g2783 . Sto6g3340 . Tpr2g3806 . Trre9g00463 . Tsu05g00345 . Vian10g00336 . Vifa1g07777 . Vimu7g02522 . Viun2g02482 . Vivi2g03747 . Vra11g0343 .
Vvi2g0543 . . . . Adu05g00978 . . . . . Ahy15g0956 . Aip05g00984 . . . . . . . Arst5g01220 . Bach4g00225 . . . . Bva11g02028 . . . . . . . . . . . . Gma01g02135 Gma11g00271 . . Gso1g1804 Gso1g1804 . . . . . . Lal16g1265 . . . . . . . Lapu3g01279 . . . . . . . . . . . . . . . . . . . . . . . . . Phco4g00392 . . . . . . . Pte14g01213 . . . . . Pvu2g1556 . . . . . Spst2g00381 . . . . Sto11g1996 . . . . . . . . . . Vimu7g02520 . . . . . . .
Vvi2g0544 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva08g00269 Bva11g02026 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto11g1993 . . . . . . . . . . . . . . . . . .
Vvi2g0545 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0546 . . . . . Adu02g02236 . . . . . . . . . . . . . Apr10g1542 . Arst2g02903 . . . . Bva08g00271 Bva11g02025 . . . . . . . . . . . . Gma01g01460 . . . Gso1g1207 . . . . . . . Lal16g1268 . . . . . . . . Lapu10g01488 . Lasa7g00614 . . . . . . . . . . . . . Mepo2g00731 . Mesa13g04681 . . . . . . . . . . . . . Pste6g02421 . . . . . Pumo7g01032 . Pvu10g0872 . Rops4g01265 . Seca4g11092 . Spst4g01666 . . Sto6g3344 Sto11g1992 . . . Trre7g00715 . . . Vian9g00839 . . . Vimu9g00573 . Viun10g01620 . Vivi5g01093 . .
Vvi2g0547 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g02024 . . . . . . . . . . . . . . . . . . . . . . . . Lal16g1269 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto6g3345 . . . . . . . . . . . . . . . . . . .
Vvi2g0548 . . . . Adu05g00981 Adu02g02234 Aed11g1655 . Aev05g0907 . Ahy15g0959 . Aip05g00988 . . . . . Apr7g0656 Apr10g1543 Arst5g01224 Arst2g02899 Bach4g00231 Bach6g00822 . Bisa06g0961 Bva08g00272 . Car08g00276 . Cca06g01728 . . Dere11g0885 Dod02g1014 . . . . Glsi07g1138 Gma01g01444 Gma11g00274 . . Gso1g1197 Gso1g1197 . . Lal15g0276 . . . Lal16g1270 . Lan18g0892 . . . Lan18g0892 . Lapu2g00325 Lapu10g01485 . Lasa7g00618 . . . . . . . . Lja2g0069 . Mal6g1620 . Mepo5g00439 Mepo2g00735 Mesa17g00450 Mesa13g04672 . . Mtr5g0378 . . . . Phco1g00961 . . Psa2g4093 . Pste1g00744 Pste6g02434 . . . . Pumo8g02236 Pumo7g01034 Pvu2g0621 Pvu10g0868 Rops1g02100 Rops4g01262 Seca10g00426 Seca4g11088 . Spst4g01660 Ssu2g2781 . . Sto11g1991 . . Trre9g00467 Trre7g00717 Tsu05g00347 . Vian10g00338 Vian9g00843 Vifa1g07775 Vifa2g05116 Vimu7g02524 Vimu9g00589 Viun2g02480 Viun10g01616 Vivi2g03744 Vivi5g01085 Vra11g0345 .
Vvi2g0549 . . . . Adu05g00983 . Aed11g1654 . Aev05g0906 . Ahy15g0960 . Aip05g00990 . . . . . Apr7g0657 . Arst5g01227 . Bach4g00232 . . . Bva08g00273 Bva11g02022 . . Cca06g01727 . . . Dod02g1013 . . . . . Gma01g02131 Gma11g00275 . . Gso1g1801 Gso1g1801 . . . . . . . . . . . . . . Lapu2g00326 . . . . . . . . . . . Lja2g0070 . . . . . . . . . . . . . . . . . . . Pste1g00763 . . . . . . . Pvu2g0622 . . . . . . . Ssu2g2780 . Sto6g3346 . . . . . . . . . . . Vimu7g02525 . . . . . Vra11g0346 .
Vvi2g0550 . . . . . . Aed11g1652 . Aev05g0905 . Ahy15g0961 . Aip05g00991 . . . . . Apr7g0658 Apr10g1544 . . . . . . Bva08g00274 Bva11g02021 Car08g00277 . Cca06g01726 . . . Dod02g1012 . . . . . Gma01g02130 Gma11g00276 . . Gso1g1800 Gso1g1800 . . . . . . Lal16g1271 . . . . . . . . . . . . . . . . . . . Lja2g0071 . Mal6g1617 . . . . . . . Mtr5g0379 . . . . . . . Psa2g4089 . . . . . . . . . . . . . . . . . Ssu2g2779 . . Sto11g1990 Tpr2g3802 . . . Tsu05g00348 . . . . . . . . . . . Vra11g0347 .
Vvi2g0551 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 218 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi2g0542 Chr2 4686529 4693245 -
Aed Aed11g1657 Chr11 20408615 20411593 -
Apr Apr7g0654 Chr7 13277013 13280301 +
Bach Bach4g00226 Chr4 1478257 1481671 +
Bva Bva08g00267 Chr08 1289922 1293363 +
Car Car08g00274 Chr08 2177133 2180557 +
Cca Cca06g01730 Chr06 32600043 32603889 -
Lal Lal23g1212 Chr23 13390127 13393874 +
Lapu Lapu2g00323 Chr2 2658526 2663053 +
Lja Lja2g0067 Chr2 516747 520065 +
Mal Mal6g1623 Chr6 30151706 30154706 -
Mepo Mepo5g00435 Chr5 3839039 3842540 +
Mesa Mesa17g00447 Chr17 5181152 5184230 +
Mtr Mtr5g0375 Chr5 3454274 3457871 +
Phac Phac2g00558 Chr2 2829111 2830979 +
Psa Psa2g4095 Chr2 418865743 418868854 -
Pste Pste1g00734 Chr1 2294891 2296676 +
Pumo Pumo8g02238 Chr8 59510288 59514036 -
Pvu Pvu2g0619 Chr2 6436720 6440672 +
Rops Rops1g02103 Chr1 42122286 42125992 -
Seca Seca10g00423 Chr10 3699553 3703613 +
Ssu Ssu2g2783 Chr2 88641352 88644895 -
Sto Sto6g3340 Chr6 39500553 39503585 +
Tpr Tpr2g3806 Chr2 40920906 40924646 -
Trre Trre9g00463 Chr9 3333341 3336766 +
Tsu Tsu05g00345 Chr05 2544263 2547807 +
Vian Vian10g00336 Chr10 3056833 3060157 +
Vifa Vifa1g07777 Chr1 1214438149 1214440683 -
Vimu Vimu7g02522 Chr7 21473439 21476946 +
Viun Viun2g02482 Chr2 31286630 31289969 -
Vivi Vivi2g03747 Chr2 147996610 147999340 -
Vra Vra11g0343 Chr11 2467477 2470448 +
Vvi Vvi2g0543 Chr2 4699941 4703868 -
Adu Adu05g00978 Chr05 12841358 12843691 +
Ahy Ahy15g0956 Chr15 14457296 14460342 +
Aip Aip05g00984 Chr05 13941248 13943653 +
Arst Arst5g01220 Chr5 12884522 12887346 +
Bach Bach4g00225 Chr4 1468333 1470666 +
Bva Bva11g02028 Chr11 17122682 17125923 -
Gma Gma01g02135 Chr01 56697294 56699546 -
Gma Gma11g00271 Chr11 2147160 2149729 +
Gso Gso1g1804 Chr1 54873863 54877021 -
Gso Gso1g1804 Chr1 54873863 54877021 -
Lal Lal16g1265 Chr16 8890144 8892387 +
Lapu Lapu3g01279 Chr3 13844637 13849244 -
Phco Phco4g00392 Chr4 2565276 2567510 +
Pte Pte14g01213 Chr14 33473485 33476699 -
Pvu Pvu2g1556 Chr2 29168464 29171622 -
Spst Spst2g00381 Chr2 2991750 2994002 +
Sto Sto11g1996 Chr11 18755484 18758129 -
Vimu Vimu7g02520 Chr7 21463550 21467051 +
Vvi Vvi2g0544 Chr2 4716821 4718407 -
Bva Bva08g00269 Chr08 1305111 1306934 -
Bva Bva11g02026 Chr11 17101713 17104145 +
Sto Sto11g1993 Chr11 18723660 18725271 +
Vvi Vvi2g0545 Chr2 4730226 4730345 +
Vvi Vvi2g0546 Chr2 4733865 4736326 +
Adu Adu02g02236 Chr02 86920342 86923298 -
Apr Apr10g1542 Chr10 27861494 27869188 +
Arst Arst2g02903 Chr2 86381918 86384934 -
Bva Bva08g00271 Chr08 1314156 1317039 +
Bva Bva11g02025 Chr11 17095030 17098157 -
Gma Gma01g01460 Chr01 49631276 49635877 -
Gso Gso1g1207 Chr1 47926043 47941219 -
Lal Lal16g1268 Chr16 8925325 8930890 +
Lapu Lapu10g01488 Chr10 25015277 25019206 -
Lasa Lasa7g00614 Chr7 26835553 26837232 +
Mepo Mepo2g00731 Chr2 8758476 8762261 +
Mesa Mesa13g04681 Chr13 74629946 74632287 -
Pste Pste6g02421 Chr6 11891591 11895031 +
Pumo Pumo7g01032 Chr7 19437198 19441565 +
Pvu Pvu10g0872 Chr10 31374981 31377703 -
Rops Rops4g01265 Chr4 33571693 33580343 -
Seca Seca4g11092 Chr4 249217330 249220393 -
Spst Spst4g01666 Chr4 56395072 56396913 -
Sto Sto6g3344 Chr6 39524337 39527573 +
Sto Sto11g1992 Chr11 18712146 18714277 -
Trre Trre7g00715 Chr7 4630618 4632596 +
Vian Vian9g00839 Chr9 12966056 12973564 +
Vimu Vimu9g00573 Chr9 7018838 7021649 +
Viun Viun10g01620 Chr10 31222593 31225057 -
Vivi Vivi5g01093 Chr5 27034659 27037731 -
Vvi Vvi2g0547 Chr2 4740591 4745003 +
Bva Bva11g02024 Chr11 17090619 17094380 -
Lal Lal16g1269 Chr16 8935417 8938690 +
Sto Sto6g3345 Chr6 39529039 39533863 +
Vvi Vvi2g0548 Chr2 4745673 4746424 -
Adu Adu05g00981 Chr05 12900561 12901233 -
Adu Adu02g02234 Chr02 86905005 86906583 +
Aed Aed11g1655 Chr11 20392832 20394411 +
Aev Aev05g0907 Chr05 6399714 6400469 +
Ahy Ahy15g0959 Chr15 14514733 14515876 -
Aip Aip05g00988 Chr05 13997918 13998833 -
Apr Apr7g0656 Chr7 13309355 13310811 -
Apr Apr10g1543 Chr10 27869923 27870952 -
Arst Arst5g01224 Chr5 12944045 12944972 -
Arst Arst2g02899 Chr2 86366534 86368111 +
Bach Bach4g00231 Chr4 1506982 1507530 -
Bach Bach6g00822 Chr6 6212674 6213969 -
Bisa Bisa06g0961 Chr06 31866807 31867640 -
Bva Bva08g00272 Chr08 1318183 1319077 -
Car Car08g00276 Chr08 2195377 2196937 -
Cca Cca06g01728 Chr06 32576534 32577973 -
Dere Dere11g0885 Chr11 16769070 16769908 +
Dod Dod02g1014 Chr02 12803535 12805217 +
Glsi Glsi07g1138 Chr07 16471952 16473248 -
Gma Gma01g01444 Chr01 49339206 49340938 +
Gma Gma11g00274 Chr11 2177709 2178538 -
Gso Gso1g1197 Chr1 47648342 47650210 +
Gso Gso1g1197 Chr1 47648342 47650210 +
Lal Lal15g0276 Chr15 1867419 1868550 +
Lal Lal16g1270 Chr16 8938870 8940160 -
Lan Lan18g0892 Chr18 14206802 14207670 -
Lan Lan18g0892 Chr18 14206802 14207670 -
Lapu Lapu2g00325 Chr2 2677900 2678763 -
Lapu Lapu10g01485 Chr10 24912572 24913769 +
Lasa Lasa7g00618 Chr7 27017832 27018667 -
Lja Lja2g0069 Chr2 528756 530140 -
Mal Mal6g1620 Chr6 30067438 30068148 +
Mepo Mepo5g00439 Chr5 3862391 3863456 -
Mepo Mepo2g00735 Chr2 8836609 8837890 -
Mesa Mesa17g00450 Chr17 5235885 5236589 -
Mesa Mesa13g04672 Chr13 74278640 74279941 +
Mtr Mtr5g0378 Chr5 3479096 3480305 -
Phco Phco1g00961 Chr1 9823073 9823923 -
Psa Psa2g4093 Chr2 418790547 418792989 +
Pste Pste1g00744 Chr1 2322353 2323634 -
Pste Pste6g02434 Chr6 11969711 11971130 -
Pumo Pumo8g02236 Chr8 59487760 59489211 +
Pumo Pumo7g01034 Chr7 19544714 19546629 -
Pvu Pvu2g0621 Chr2 6458649 6459726 -
Pvu Pvu10g0868 Chr10 31138346 31139536 +
Rops Rops1g02100 Chr1 42083901 42084910 +
Rops Rops4g01262 Chr4 33554343 33556202 +
Seca Seca10g00426 Chr10 3729276 3730057 -
Seca Seca4g11088 Chr4 249183439 249184345 +
Spst Spst4g01660 Chr4 56311148 56321739 +
Ssu Ssu2g2781 Chr2 88608872 88609606 +
Sto Sto11g1991 Chr11 18699994 18702570 +
Trre Trre9g00467 Chr9 3359004 3359708 -
Trre Trre7g00717 Chr7 4651145 4652235 -
Tsu Tsu05g00347 Chr05 2563413 2564452 -
Vian Vian10g00338 Chr10 3076143 3077445 -
Vian Vian9g00843 Chr9 13268444 13269319 -
Vifa Vifa1g07775 Chr1 1213884261 1213884950 +
Vifa Vifa2g05116 Chr2 1528168597 1528169679 +
Vimu Vimu7g02524 Chr7 21491412 21492168 -
Vimu Vimu9g00589 Chr9 7169554 7170429 -
Viun Viun2g02480 Chr2 31265850 31266972 +
Viun Viun10g01616 Chr10 31188119 31189422 +
Vivi Vivi2g03744 Chr2 147960686 147961770 +
Vivi Vivi5g01085 Chr5 26887181 26888502 +
Vra Vra11g0345 Chr11 2487255 2488527 -
Vvi Vvi2g0549 Chr2 4748853 4751847 +
Adu Adu05g00983 Chr05 12916972 12919610 +
Aed Aed11g1654 Chr11 20385715 20388194 -
Aev Aev05g0906 Chr05 6392561 6394558 -
Ahy Ahy15g0960 Chr15 14545143 14548465 +
Aip Aip05g00990 Chr05 14065182 14067822 +
Apr Apr7g0657 Chr7 13324838 13326800 +
Arst Arst5g01227 Chr5 12960320 12963505 +
Bach Bach4g00232 Chr4 1511137 1513176 +
Bva Bva08g00273 Chr08 1320793 1323486 +
Bva Bva11g02022 Chr11 17087423 17089879 -
Cca Cca06g01727 Chr06 32569965 32572779 -
Dod Dod02g1013 Chr02 12792491 12794723 -
Gma Gma01g02131 Chr01 56661697 56664388 -
Gma Gma11g00275 Chr11 2183483 2186661 +
Gso Gso1g1801 Chr1 54839517 54842680 -
Gso Gso1g1801 Chr1 54839517 54842680 -
Lapu Lapu2g00326 Chr2 2685093 2688535 +
Lja Lja2g0070 Chr2 531559 534187 +
Pste Pste1g00763 Chr1 2383480 2385580 +
Pvu Pvu2g0622 Chr2 6489007 6492336 +
Ssu Ssu2g2780 Chr2 88591229 88593881 -
Sto Sto6g3346 Chr6 39535732 39549347 +
Vimu Vimu7g02525 Chr7 21498834 21504381 +
Vra Vra11g0346 Chr11 2495576 2498742 +
Vvi Vvi2g0550 Chr2 4752553 4755341 -
Aed Aed11g1652 Chr11 20372814 20375489 +
Aev Aev05g0905 Chr05 6389257 6391903 +
Ahy Ahy15g0961 Chr15 14548601 14551600 -
Aip Aip05g00991 Chr05 14068342 14070817 -
Apr Apr7g0658 Chr7 13327346 13330246 -
Apr Apr10g1544 Chr10 27883201 27887268 -
Bva Bva08g00274 Chr08 1324131 1327052 -
Bva Bva11g02021 Chr11 17084785 17086945 +
Car Car08g00277 Chr08 2199181 2202629 -
Cca Cca06g01726 Chr06 32565520 32569521 +
Dod Dod02g1012 Chr02 12788924 12791771 +
Gma Gma01g02130 Chr01 56656234 56659641 +
Gma Gma11g00276 Chr11 2190622 2193887 -
Gso Gso1g1800 Chr1 54833749 54837448 +
Gso Gso1g1800 Chr1 54833749 54837448 +
Lal Lal16g1271 Chr16 8950279 8954788 -
Lja Lja2g0071 Chr2 535079 538203 -
Mal Mal6g1617 Chr6 30045791 30048681 +
Mtr Mtr5g0379 Chr5 3485106 3488770 -
Psa Psa2g4089 Chr2 418739530 418743028 +
Ssu Ssu2g2779 Chr2 88586989 88589892 +
Sto Sto11g1990 Chr11 18686573 18690554 +
Tpr Tpr2g3802 Chr2 40891022 40896509 +
Tsu Tsu05g00348 Chr05 2583023 2586497 -
Vra Vra11g0347 Chr11 2499033 2502063 -
Vvi Vvi2g0551 Chr2 4757276 4758589 -
Adu Adu02g02234 Chr02 86905005 86906583 +
Arst Arst2g02899 Chr2 86366534 86368111 +
Bach Bach6g00822 Chr6 6212674 6213969 -
Bisa Bisa06g0961 Chr06 31866807 31867640 -
Dere Dere11g0885 Chr11 16769070 16769908 +
Glsi Glsi07g1138 Chr07 16471952 16473248 -
Lapu Lapu10g01485 Chr10 24912572 24913769 +
Lasa Lasa7g00618 Chr7 27017832 27018667 -
Mepo Mepo2g00735 Chr2 8836609 8837890 -
Mesa Mesa13g04672 Chr13 74278640 74279941 +
Phco Phco1g00961 Chr1 9823073 9823923 -
Pste Pste6g02434 Chr6 11969711 11971130 -
Pumo Pumo7g01034 Chr7 19544714 19546629 -
Pvu Pvu10g0868 Chr10 31138346 31139536 +
Rops Rops4g01262 Chr4 33554343 33556202 +
Seca Seca4g11088 Chr4 249183439 249184345 +
Spst Spst4g01660 Chr4 56311148 56321739 +
Trre Trre7g00717 Chr7 4651145 4652235 -
Vian Vian9g00843 Chr9 13268444 13269319 -
Vifa Vifa2g05116 Chr2 1528168597 1528169679 +
Vimu Vimu9g00589 Chr9 7169554 7170429 -
Viun Viun10g01616 Chr10 31188119 31189422 +
Vivi Vivi5g01085 Chr5 26887181 26888502 +
Ahy Ahy15g0956 Chr15 14457296 14460342 +
Aip Aip05g00984 Chr05 13941248 13943653 +