LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Psa2g4095	ATGGCTTCCACACCGTCGCCACCAATGTCAGTGAATCCCGGTCGCATTCGAACCCTGAAAGAAGGTTCTGGAAAAACCGGCCCCGTCGTGTACTGGATGTTCAGAGATCAACGGCTGAAAGACAACTGGGCTCTCATCCACGCCGTTCATCAAGCCAACAAATCCAACGTTCCTGTAGCCATTGTTTTCAATCTCTTCAACAGCTTTATTGGCGCAAAGTCTCGTCATTTTGGGTTTATGCTCAGGGGTTTGCGCCAATTGTGTCACCAGCTTCAACACACTCTTCAAATACCCTTTTTCTTGTTTCAGGGTGAAGCGGAGGAAAATGTATCGAAATTTGTTACAGAATGTGGGGCTTCACTTTTGGTGACAGATATGTCACCATTAAGAGAATTGAAGAAATGCAAAGCTGGGATTTGTGAGAGGGTTAGCCATTTGGTTACTATTCATGAAGTTGATGCTCACAACGTTGTGCCTCTTTGGGTGGCTTCTGAGAAATTGGAGTATAGTGCTAGAACATTAAGGGGAAAGATTAACAAAAAGCTTCCTGAATATCTTGTTGAATTTCCCATCATTGAACCACCAACTACGAAATGGGTCAATGCCGAGGATCATACAATAGACTGGGATGGTATCATTGCTCAAGTACTGAGGCGTGGAGCTGAGGTTCCTGAAGTTAGTTGGTGTGAGCCTGGGGAAATTGCTGCTATGGAAGTATTGATGGGAAGTAAGAATGGATTCTTGACTAAAAGGTTGAGAAGTTATTCCACCGATCGCAATAACCCTTGTAAACCAACTGCACTTTCTGGTTTATCTCCTTATTTGCATTTTGGACAGATATCTGCTCAAAGATGTGCTTTAGAAGCTCGTAAATTAAGAGCTTCGCATCCTCAGGCTGTTGATACTTTCCTGGAGGAGTTGATTGTGAGGAGAGAACTTGCTGATAACTTTTGCTTCTATCAACCTCATTATGATTCACTAAAAGGAGCGTGGGAGTGGGCTCGTAAGACCTTACTCGATCATGCCTCGGATAAGAGAGAACACGTTTACACGAGGGAGCAGTTGGAGAAAGCTAAGACTGCTGATCCTCTCTGGAATGCTTCCCAACTGGAGATGGTTCACTATGGGAAAATGCATGGTTTTATGAGAATGTATTGGGCGAAGAAGATTCTTGAATGGACAAAAGGACCTGAAGAAGCACTTGAGATATGTATATATTTAAATGATAAGTATGAAATGGATGGGAGGGATCCAAGTGGTTATGTTGGCTGCATGTGGTCTATATGTGGGGTACATGATCAGGGTTGGCGAGAGCGTCCCATTTTCGGGAAAATTCGATACATGAATTATGCAGGGTGCAAAAGAAAATTTGATGTTGACAAATACATTGCATATGTTAATAAACTAGTTGGTGACCTCAGGAAGAGAAAGGCAGAAAATTTGCTGTCTGAGAAGGAGAAAGTACTCCGCTGTTCTAATCCTGAGGATTGA	1491	0.4306	MASTPSPPMSVNPGRIRTLKEGSGKTGPVVYWMFRDQRLKDNWALIHAVHQANKSNVPVAIVFNLFNSFIGAKSRHFGFMLRGLRQLCHQLQHTLQIPFFLFQGEAEENVSKFVTECGASLLVTDMSPLRELKKCKAGICERVSHLVTIHEVDAHNVVPLWVASEKLEYSARTLRGKINKKLPEYLVEFPIIEPPTTKWVNAEDHTIDWDGIIAQVLRRGAEVPEVSWCEPGEIAAMEVLMGSKNGFLTKRLRSYSTDRNNPCKPTALSGLSPYLHFGQISAQRCALEARKLRASHPQAVDTFLEELIVRRELADNFCFYQPHYDSLKGAWEWARKTLLDHASDKREHVYTREQLEKAKTADPLWNASQLEMVHYGKMHGFMRMYWAKKILEWTKGPEEALEICIYLNDKYEMDGRDPSGYVGCMWSICGVHDQGWRERPIFGKIRYMNYAGCKRKFDVDKYIAYVNKLVGDLRKRKAENLLSEKEKVLRCSNPED*	497

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Psa2g4095	496	ProSitePatterns	DNA photolyases class 2 signature 2.	430	449	IPR032673	-
	Psa2g4095	496	SUPERFAMILY	Cryptochrome/photolyase, N-terminal domain	28	199	IPR036155	-
	Psa2g4095	496	ProSitePatterns	DNA photolyases class 2 signature 1.	303	317	IPR032673	-
	Psa2g4095	496	Gene3D	HUPs	9	154	IPR014729	-
	Psa2g4095	496	TIGRFAM	phr2: deoxyribodipyrimidine photolyase	10	465	IPR008148	GO:0003904\|GO:0006281
	Psa2g4095	496	ProSiteProfiles	Photolyase/cryptochrome alpha/beta domain profile.	27	160	IPR006050	-
	Psa2g4095	496	SUPERFAMILY	Cryptochrome/photolyase FAD-binding domain	219	464	IPR036134	-
	Psa2g4095	496	Pfam	DNA photolyase	29	190	IPR006050	-
	Psa2g4095	496	PANTHER	DEOXYRIBODIPYRIMIDINE PHOTOLYASE	9	490	-	-
	Psa2g4095	496	Gene3D	DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3	327	477	-	-
	Psa2g4095	496	Gene3D	-	155	326	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Psa2g4095	K01669		-	gmx:100170749	857.44

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Psa2g4095	2	418865743	418868854	Psa2g4095	2	418865743	418868854	ECH