Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto6g3340 ATGGCTTCCGCGACGTCACAAATGGCGGTCCAGGCGGGTCGAATTAGGGTATTGAAAGAGAGATTGAGGGAGCTTGAGGGAGAGGTGGGTCCCGTTGTGTACTGGATGTTCAGAGATCAACGGGTGAGAGATAATTGGGCTCTTATCCACGCCGTTCATCAGGCTAACAAAGATAGCGTTCCTGTCGCTGTTGTTTTCAATCTTTTCGATCAGTTTTTGGGTGCGAAAGCCCGccattttgggtttatgttgaGAGGTTTGCGCCAATTGTCCCGAGACATTGAACACACTCTTCATATCCCCTTTTTCTTGGTTCAGGGAGAGGCAGAGGACACTATACCAAATTTCCTCAGAGAATGTGGAGCTTCACTATTGGTAACAGACTTCTCACCCTTACGGGAAGTGCAGAGGTGCAAAGCTGATATTTGCAAGAGGGTAAGCGATTTGGTTGCCGTACATGAAGTTGATGCTCACAATGTAGTACCCCTTTGGGTAGCGTCGGAGAAGTTAGAGTATAGTGCCAAGACCATAAGAGGAAAAATTACCAAGAGGCTTTCTGAGTATCTGATTGATTTTCCCACCATTGAGCCACCAACTAGGAAATGGGTCACTGAGAATCAGCCGATCGATTGGGATGACGTTATTGATGGTGTATTGAGTAGGAAAGGAGCAGAGGTTCCTGAATTACAGTGGTGTGAGCCAGGGGAAATTGCTGCAATGGAAGTATTGAtgggaaataaaaatggattctTGACTAAAAGATTGAAAAATTATTCTGTAGACCGGAATGATCCATCCAAACCCAGTGGCCTTTCTGGTCTATCTCCCTATTTGCATTTTGGACAAATATCTGCTCAACGCTGTGCTCTAGAAGCACGAAAGCTACGAAGCTCAAGTCCACAGGCCGTTGATGCTTTCTTAGAGGAGTTGATTGTGCGGAGAGAACTTGCTGATAACTTTTGCTTTTATCAGCCACATTATGATTCATTAATGGGAGCATGGGAATGGGCTCGAAAGACCTTATTGGACCATGCCAAAGATAAACGAGAACATATTTACTCGAGAGAGCAATTGGAGAAAGGACAAACTGCTGATCCTCTCTGGAATGCTTCTCAGAAGGAGATGGTTTACCATGGGAAAATGCATGGTTATATGAGaATGTATTGGGCTAAGAAGATACTTGAGTGGACTAGTGGACCTGAAGAAGCCCTTGAGATATGCATATATTTGAATGATAAGTACGAAATTGATGGGAGGGATCCAAATGGTTATGTTGGCTGCATGTGGTCGATATGTGGGGTCCATGATCAGGGTTGGCGAGAGCGACCAATTTTTGGGAAAATTCGATACATGAACTATGCAGGttgcaaaagaaaatttgatgTGGACAGATACATAGCATATGTCAATAAATTAGTTGGTGAACTAAGAAAGAGAAAGGCAGAGAACTTGCTTTCTGAAAAGGATAAAGTACTTCATCGTTAG 1485 0.4249 MASATSQMAVQAGRIRVLKERLRELEGEVGPVVYWMFRDQRVRDNWALIHAVHQANKDSVPVAVVFNLFDQFLGAKARHFGFMLRGLRQLSRDIEHTLHIPFFLVQGEAEDTIPNFLRECGASLLVTDFSPLREVQRCKADICKRVSDLVAVHEVDAHNVVPLWVASEKLEYSAKTIRGKITKRLSEYLIDFPTIEPPTRKWVTENQPIDWDDVIDGVLSRKGAEVPELQWCEPGEIAAMEVLMGNKNGFLTKRLKNYSVDRNDPSKPSGLSGLSPYLHFGQISAQRCALEARKLRSSSPQAVDAFLEELIVRRELADNFCFYQPHYDSLMGAWEWARKTLLDHAKDKREHIYSREQLEKGQTADPLWNASQKEMVYHGKMHGYMRMYWAKKILEWTSGPEEALEICIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWRERPIFGKIRYMNYAGCKRKFDVDRYIAYVNKLVGELRKRKAENLLSEKDKVLHR 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto6g3340 494 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 31 216 IPR036155 -
Sto6g3340 494 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 223 480 IPR036134 -
Sto6g3340 494 Gene3D - 158 329 - -
Sto6g3340 494 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 30 163 IPR006050 -
Sto6g3340 494 Gene3D HUPs 8 157 IPR014729 -
Sto6g3340 494 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 6 490 - -
Sto6g3340 494 Pfam DNA photolyase 32 194 IPR006050 -
Sto6g3340 494 TIGRFAM phr2: deoxyribodipyrimidine photolyase 9 468 IPR008148 GO:0003904|GO:0006281
Sto6g3340 494 ProSitePatterns DNA photolyases class 2 signature 1. 306 320 IPR032673 -
Sto6g3340 494 Coils Coil 8 28 - -
Sto6g3340 494 ProSitePatterns DNA photolyases class 2 signature 2. 433 452 IPR032673 -
Sto6g3340 494 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 330 480 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto6g3340 K01669 - gmx:100170749 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto6g3340 6 39500553 39503585 Sto6g3340 6 39500553 39503585 ECH