Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0542 ATGGCCTCTCCATCTTCAGCCCTTAACAAATCGTCCATGGTTCAACAGGGAAGAATCAGGGTTTTGAAGGAAGGATCCACGCCGTCTGGTCGAGATGCGGGTCCCGTAGTCTACTGGATGTTTAGAGATCAACGGTTGAGAGACAACTGGGCATTGATCCACGCCGTTGATCAGGCCAACAAAGCCAATGTTCCTGTGGCTATAGCCTTCAATTTGTTCGATCAGTTCTTGGGGGCCAAAGCTCGGCAGTTAGGGTTTATGTTGAGAGGTTTGCGACTTCTCCATCGTGATCTCGAACAAACTCTTCAGATTCCTCTTTTAGATTCCCATTCTGGGGAAGCCATAGAAACTATTCCCAATTTTCTTAGGGAATATGGAGCTTCACTTCTTGTAACGGACTTCTCACCTTTACGTGAAGTTCAGAAATGGAAAGAGGAAATTTGCAAGAGGGTGGGGAAAAAAGTGTCCATACATGAAGTTGATGCTCACAATATTGTGCCTACTTGGGTTGCATCCGAGAAATTGGAGTATAGTGCTAGGACAATAAGGGGTAAGATCAATAAACTGCTTCCTGAGTATCTCATTGATTTTCCAACATTACAACCTCCGAGTATAAAATGGGCTGGCACAAATCAGTCCATAGATTGGGATGACCTGATTACTGAAGTTTTGAGGGAAGGGGCAGAAGTCCCTGAAATCAAATGGTGTGAATCAGGAGAAAATGCAGCGGTGGAAATATTGATGGGAAGTAAAAATGGGTTCCTGACAAAGAGGTTGAAGAATTATTCTACAGACCGGAATAACCCATTAAAGCCTGGAGCGCTCTCTGGTCTCTCTCCATATTTGCATTTTGGACAAATATCTGCACAACGGTGTGCCTTAGAGGCAAAAAAAAATCGGAAAAATTGCCCTCAGGCAGTTGATGTGTTCTTGGAGGAGTTGATTGTGCGGAGGGAACTTGCTGATAACTTTTGCTTCTACCAGCCTCGATATAATTCATTACAGGGGGCATGGGAATGGGCGCGTAAGACCTTGATGGACCATGCCTCTGACAAGCGAGAACATATCTATACGAAGGAGCAACTGGAGAATGCACAAACTGCCGATCCTCTCTGGAACGCTTCTCAGTTGGAGATGGTTCATTATGGGAAGATGCATGGTTTTATGCGGCAAATAAAAAACATTTGCAGGATGTATTGGGCAAAGAAGATCCTTGAATGGACCAGAGGACCTGAAGAAGCCCTTGCAATATCAATTTATTTGAACGACAAGGTAAGTTAA 1281 0.4426 MASPSSALNKSSMVQQGRIRVLKEGSTPSGRDAGPVVYWMFRDQRLRDNWALIHAVDQANKANVPVAIAFNLFDQFLGAKARQLGFMLRGLRLLHRDLEQTLQIPLLDSHSGEAIETIPNFLREYGASLLVTDFSPLREVQKWKEEICKRVGKKVSIHEVDAHNIVPTWVASEKLEYSARTIRGKINKLLPEYLIDFPTLQPPSIKWAGTNQSIDWDDLITEVLREGAEVPEIKWCESGENAAVEILMGSKNGFLTKRLKNYSTDRNNPLKPGALSGLSPYLHFGQISAQRCALEAKKNRKNCPQAVDVFLEELIVRRELADNFCFYQPRYNSLQGAWEWARKTLMDHASDKREHIYTKEQLENAQTADPLWNASQLEMVHYGKMHGFMRQIKNICRMYWAKKILEWTRGPEEALAISIYLNDKVS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0542 426 Pfam DNA photolyase 36 199 IPR006050 -
Vvi2g0542 426 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 35 219 IPR036155 -
Vvi2g0542 426 Gene3D HUPs 12 162 IPR014729 -
Vvi2g0542 426 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 334 426 - -
Vvi2g0542 426 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 7 424 - -
Vvi2g0542 426 ProSitePatterns DNA photolyases class 2 signature 1. 310 324 IPR032673 -
Vvi2g0542 426 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 225 416 IPR036134 -
Vvi2g0542 426 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 34 168 IPR006050 -
Vvi2g0542 426 FunFam Deoxyribodipyrimidine photolyase 13 162 - -
Vvi2g0542 426 FunFam Deoxyribodipyrimidine photolyase 163 333 - -
Vvi2g0542 426 Gene3D - 163 333 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0542 K01669 - vvi:100243038 827.394