Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g00463 ATGGCTTCCACACCGTCGCCTCCATTGTCACCGCCGGTAAATCCGGGTCGCATTCGAACCTTAAAAGAAGGTTCTGGAAAAACAGGCCCCGTCGTGTATTGGATGTTCAGAGATCAACGGTTGAAAGACAATTGGGCTCTCATCCACGCCGTTCATCAAGCCAACAAATCCAACGTTCCCATTGCCGTTGTTTTCAATCTCTTCGATCATTTTCTCGGTGCAAAGTCTCGTCAATTAGGGTTTATGCTTAAAGGTTTGCGTCAATTGTGTCACCAACTTCAACACACTCTTCAAATACCCTTTTTCTTGTTTCAGGGTGAGGCAGAAGAAACTGTATCGAAATTTGTTAGAGAATGTGGAGCTTCACTTTTGGTGACAGACATGTCACCTTTAAGAGAAGTGAAGAAATGCAAAGCCGAGATTTGTGAGAGGGTAAGCGATTTGGTTGCTGTTCATGAAGTTGATGCTCACAACATTGTGCCTCTTTGGGTAGCTTCTGAGAAGTTGGAGTATAGTGCTAGAACATTAAGGGGAAAGATAAACAAAAAGCTTTCTGATTATCTTGTTGATTTTCCAAATGTTGAACCACCGACTACAAAATGGGTTAGCACCGAGGATCACACGATAGACTGGGATAAAATCATTGCTCAAGTGTTAAGGAGCGGAGCTGAGGTTCCTGAAGTTAATTGGTGTGAGCCTGGAGAAAGTGCTGCTATGGAAGTATTGATGGGAAGTACAAATGGATTCTTGACCAAAAGGTTGAGAAGTTATTCCACAGATCGCAATAACCCTTGTAAACCAACTGCACTTTCTGGTTTATCTCCATATTTGCATTTTGGACAGATATCTGCTCAAAGATGTGCTTTAGAAGCTCGTAAGCTAAGAAATTCATATCCTCAGGCGGTTGATACTTTCTTGGAGGAGTTGATTGTGCGGAGAGAACTTGCTGATAACTTTTGCTACTATCAGCCTCATTATGATTCATTACAAGGAGCATGGGAATGGGCTCGTAAGACCTTACTCGATCACGCATCTGATAAGCGACAACATAATTACACGAGGGAGCAATTGGAGAAAGCACAGACTGCTGATCCTCTCTGGAATGCTTCTCAACTGGAGATGGTTCACTATGGGAAAATGCATGGTTTTATGAGAATGTATTGGGCAAAGAAAATACTTGAATGGACAAGAGGACCTGAAGAAGCACTTGAGATATGTATATATTTAAATGATAAGTATGAAATGGATGGAAGGGATCCAAGTGGTTATGTTGGCTGCATGTGGTCTATATGTGGGGTACACGATCAGGGTTGGCGAGAGCGTCCCGTGTTTGGGAAAATTCGATACATGAATTATGAAGGGTGCAAAAGAAAATTTGATGTTGACAGATACATTGCATATGTTCATAAATTAGTTGGTGAAATGAGGAAGAGAAAGGCTGAAAATTTGCCGTTACAAAAGGAGAAAGTACTCCGCCATTGTACTCCCGAGGATTGA 1497 0.4202 MASTPSPPLSPPVNPGRIRTLKEGSGKTGPVVYWMFRDQRLKDNWALIHAVHQANKSNVPIAVVFNLFDHFLGAKSRQLGFMLKGLRQLCHQLQHTLQIPFFLFQGEAEETVSKFVRECGASLLVTDMSPLREVKKCKAEICERVSDLVAVHEVDAHNIVPLWVASEKLEYSARTLRGKINKKLSDYLVDFPNVEPPTTKWVSTEDHTIDWDKIIAQVLRSGAEVPEVNWCEPGESAAMEVLMGSTNGFLTKRLRSYSTDRNNPCKPTALSGLSPYLHFGQISAQRCALEARKLRNSYPQAVDTFLEELIVRRELADNFCYYQPHYDSLQGAWEWARKTLLDHASDKRQHNYTREQLEKAQTADPLWNASQLEMVHYGKMHGFMRMYWAKKILEWTRGPEEALEICIYLNDKYEMDGRDPSGYVGCMWSICGVHDQGWRERPVFGKIRYMNYEGCKRKFDVDRYIAYVHKLVGEMRKRKAENLPLQKEKVLRHCTPED 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g00463 498 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 29 162 IPR006050 -
Trre9g00463 498 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 6 489 - -
Trre9g00463 498 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 222 471 IPR036134 -
Trre9g00463 498 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 329 479 - -
Trre9g00463 498 Gene3D HUPs 11 156 IPR014729 -
Trre9g00463 498 Gene3D - 157 328 - -
Trre9g00463 498 FunFam Deoxyribodipyrimidine photolyase 12 156 - -
Trre9g00463 498 MobiDBLite consensus disorder prediction 1 24 - -
Trre9g00463 498 ProSitePatterns DNA photolyases class 2 signature 1. 305 319 IPR032673 -
Trre9g00463 498 Pfam DNA photolyase 31 193 IPR006050 -
Trre9g00463 498 NCBIfam deoxyribodipyrimidine photo-lyase 13 467 IPR008148 GO:0003904|GO:0006281
Trre9g00463 498 FunFam Deoxyribodipyrimidine photolyase 329 476 - -
Trre9g00463 498 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 30 202 IPR036155 -
Trre9g00463 498 FunFam Deoxyribodipyrimidine photolyase 157 328 - -
Trre9g00463 498 ProSitePatterns DNA photolyases class 2 signature 2. 432 451 IPR032673 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g00463 Trre-Chr9 3333341 3336766 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g00463 K01669 - gmx:100170749 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g00463 9 3333341 3336766 Trre9g00463 9 3333341 3336766 ECH