Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu05g00345 ATGGCTTCCACACCGTCGCCTCCAATGTCGCCGCCGGTAAACCCAGGTCGCATTCGAACCTTAAAAGAAGGTTCTGGAAAAACAGGCCCCGTCGTGTACTGGATGTTCAGAGATCAACGGTTGAAAGACAATTGGGCTCTCATCCACGCCGTTCATCAAGCCAATAAATCCAACGTTCCCGTTGCCGTTGTTTTCAATCTCTTTGATCACTTTCTCGGTGCAAAGTCTCGTCAATTAGGGTTTATGCTTAAAGGTTTGCGTCAATTGTGTCACCAATTTCAACACACTCTTCAAATACCCTTTTTCTTGTTTCAGGGCGAGGCAGAGGAAACTGTATCGAAATTTGTTAGAGAATGTGGAGCTTCACTTTTGGTGACAGACATGTCACCTTTAAGAGAAGTGAAGAAATGTAAAGCTGAGATTTGTGAGAGAGTAAGCGATTTGGTTACTGTTCATGAAGTTGATGCTCACAACATTGTGCCTCTTTGGGTAGCTTCTGAGAAATTGGAGTATAGTGCTAGAACATTAAGGGGAAAGATAAACAAAAAGCTTTCTGATTATCTAGTTGATTTTCCGAATGTTGAATCACCAACTACGAAATGGGTTAGGACTGAGGATCACGCGATAGACTGGGATGAAATCATTGCTCAAGTGTTAAGGAGCGGAGCTGAGGTTCCTGAAGTTAATTGGTGTGAGCCTGGAGAAAGTGCTGCTATGGAAGTATTGATGGGAAGTACAAATGGATTCTTGACTAAAAGGTTGAGAAGTTATTCCACAGATCGCAATAACCCTTGTAAACCAACTGCCCTTTCTGGTTTATCTCCATATTTGCATTTTGGACAGATATCTGCTCAAAGATGTGCTTTAGAAGCTCGTAAGCTAAGAAATTCATATCCTCAGGCGGTTGATACTTTCTTGGAGGAGTTGATTGTGCGGAGAGAACTTGCTGATAACTTTTGCTACTATCAGCCTCATTATGATTCATTACAAGGAGCATGGGAATGGGCTCGTAAGACCTTACTCGATCACGCGTCTGATAAGCGACAACATAATTACACGAGGGAGCAATTGGAGAAAGCACAGACTGCTGATCCTCTCTGGAATGCTTCTCAACTGGAGATGGTTCACTATGGGAAAATGCATGGTTTTATGAGAATGTATTGGGCGAAGAAGATACTTGAATGGACAAGAGGACCTGAAGAAGCACTTGAgatatgtatttatttaaatgATAAGTACGAAATGGATGGGAGGGATCCAAGTGGTTATGTTGGCTGCATGTGGTCTATATGTGGAGTACATGATCAGGGTTGGCGAGAGCGCCCCATTTTTGGGAAAATTCGATACATGAATTATGAAGGGTGCAAAAGAAAATTTGATGTTGACAGATACATTGCATATGTAAATAAATTAGTTGGTGAGCTGAGGAAGAGAAAGGCCGAAAATTTGCCGTCACAAAAGGAGAAAGTACTCCGCCATTGTAATCCTGAGGATTGA 1497 0.4195 MASTPSPPMSPPVNPGRIRTLKEGSGKTGPVVYWMFRDQRLKDNWALIHAVHQANKSNVPVAVVFNLFDHFLGAKSRQLGFMLKGLRQLCHQFQHTLQIPFFLFQGEAEETVSKFVRECGASLLVTDMSPLREVKKCKAEICERVSDLVTVHEVDAHNIVPLWVASEKLEYSARTLRGKINKKLSDYLVDFPNVESPTTKWVRTEDHAIDWDEIIAQVLRSGAEVPEVNWCEPGESAAMEVLMGSTNGFLTKRLRSYSTDRNNPCKPTALSGLSPYLHFGQISAQRCALEARKLRNSYPQAVDTFLEELIVRRELADNFCYYQPHYDSLQGAWEWARKTLLDHASDKRQHNYTREQLEKAQTADPLWNASQLEMVHYGKMHGFMRMYWAKKILEWTRGPEEALEICIYLNDKYEMDGRDPSGYVGCMWSICGVHDQGWRERPIFGKIRYMNYEGCKRKFDVDRYIAYVNKLVGELRKRKAENLPSQKEKVLRHCNPED 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu05g00345 498 MobiDBLite consensus disorder prediction 1 24 - -
Tsu05g00345 498 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 29 162 IPR006050 -
Tsu05g00345 498 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 329 479 - -
Tsu05g00345 498 ProSitePatterns DNA photolyases class 2 signature 1. 305 319 IPR032673 -
Tsu05g00345 498 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 222 477 IPR036134 -
Tsu05g00345 498 ProSitePatterns DNA photolyases class 2 signature 2. 432 451 IPR032673 -
Tsu05g00345 498 Gene3D - 157 328 - -
Tsu05g00345 498 TIGRFAM phr2: deoxyribodipyrimidine photolyase 13 467 IPR008148 GO:0003904|GO:0006281
Tsu05g00345 498 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 13 492 - -
Tsu05g00345 498 Gene3D HUPs 11 156 IPR014729 -
Tsu05g00345 498 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 30 198 IPR036155 -
Tsu05g00345 498 Pfam DNA photolyase 31 193 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu05g00345 Tsu-Chr5 2544263 2547807 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu05g00345 K01669 - gmx:100170749 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu05g00345 05 2544263 2547807 Tsu05g00345 05 2544263 2547807 ECH