Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g00423 ATGGCTTCTGCCTCGTCGCGAATATCGGTCAATCCGGGTCGCATTCGGACCCTGAAAGAAGGGTCGCGTGGAGAATCGTGTCCGGGTCCGGTCGTGTATTGGATGTTCAGAGATCAACGGGTGAGAGACAATTGGGCTCTGATCCACGCCGTTGATGAGGCCAACAAAGCCAACGTTCCCGTAGCCGTTGTTTTCAATCTCTACGACCATTTTCTGGGCGCAAGGTCCCGTCATTTAGGGTTCATGCTTAGGGGTTTGCGCCATTTGTGCCACCAACTGCGACACACTCTTCAAATCCCCTTTTTCTTGTTTCGGGGTGAGGCAGAGGAGACTGTATCGAAATTTGTTAGAGAATGTGGAGCTTCACTGTTGGTGACAGACATGTCACCCTTGCGGGAAGTGCGAAAGTGCAAAGCGGAGATTTGTAAGAGAGTAAGCGATTTGGTTACTGTGCATGAAGTGGATGCTCACAACGTGGTACCCGTTTGGGTGGCCTCTGATAAATTGGAATACAGTGCTAAGACAATTAGGGGAAAGATAAATAAAAGGCTTTCTGAGTATCTCATTGATTTTCCTAACATTGAACCACCCACTAGGAAATGGGTCATCACAGAGGAATACTCCGTTGACTGGGATGATCTTATTGCTGACGTGTTGAGGAATGGAGATGAGGTTCCTGAAGTTGATTGGTGTGAGCCTGGGGAAATTGCTGCAATGGAAGTATTGATGGGTAGTAAAAATGGATTCTTGACTAAAAGGTTGAAAAATTATTCTATAGATCGCAACAACCCGTGTAAAACCACTGCCCTTTCTGGTTTATCTCCCTACTTGCATTTTGGGCAGATATCTGCTCAGCGGTGTGCTTTAGAAGCACGTAAGATGCGAACTTCATGTCCTCAGGCGGCTGATGCTTTCTTGGAGGAATTGATTGTGCGGAGAGAACTTGCTGATAACTTTTGCTTCTATCAGCCTCATTACGATTCAATACAAGGGGCATGGGAGTGGGCTCGTAAGACCTTACTTGATCATGCCACTGATAAGCGAGAACATGTTTACTCGAGGGAGCAATTGGAGAAAGCACAGACTGCTGATCCCCTGTTTCTAACTTATTGGCATTTTACTGCCTCTTTTGCCATTTACCTCAATAAGCATTATATCGTTTTGTTGCAAACATCAGCTCTGGAATGCTTCTCAGCTGGAGATGGTTCACTTTGGGAAAATGCATGGTTTTATGCGAATGTATTGGGCAAAGAAGATACTTGA 1263 0.4584 MASASSRISVNPGRIRTLKEGSRGESCPGPVVYWMFRDQRVRDNWALIHAVDEANKANVPVAVVFNLYDHFLGARSRHLGFMLRGLRHLCHQLRHTLQIPFFLFRGEAEETVSKFVRECGASLLVTDMSPLREVRKCKAEICKRVSDLVTVHEVDAHNVVPVWVASDKLEYSAKTIRGKINKRLSEYLIDFPNIEPPTRKWVITEEYSVDWDDLIADVLRNGDEVPEVDWCEPGEIAAMEVLMGSKNGFLTKRLKNYSIDRNNPCKTTALSGLSPYLHFGQISAQRCALEARKMRTSCPQAADAFLEELIVRRELADNFCFYQPHYDSIQGAWEWARKTLLDHATDKREHVYSREQLEKAQTADPLFLTYWHFTASFAIYLNKHYIVLLQTSALECFSAGDGSLWENAWFYANVLGKEDT. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g00423 420 FunFam Deoxyribodipyrimidine photolyase 9 156 - -
Seca10g00423 420 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 222 367 IPR036134 -
Seca10g00423 420 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 329 385 - -
Seca10g00423 420 Gene3D HUPs 8 156 IPR014729 -
Seca10g00423 420 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 29 162 IPR006050 -
Seca10g00423 420 FunFam Deoxyribodipyrimidine photolyase 157 328 - -
Seca10g00423 420 Pfam DNA photolyase 31 193 IPR006050 -
Seca10g00423 420 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 4 366 - -
Seca10g00423 420 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 30 202 IPR036155 -
Seca10g00423 420 ProSitePatterns DNA photolyases class 2 signature 1. 305 319 IPR032673 -
Seca10g00423 420 Gene3D - 157 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g00423 Seca-Chr10 3699553 3703613 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g00423 K01669 - gmx:100170749 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g00423 10 3699553 3703613 Seca10g00423 10 3699553 3703613 ECH