Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo8g02238 ATGGCTTCCGCAGCGTCGCCGATGACGGTCCAGGCGGGTCGGGTCCGGACCCTGAAAGAAGGGTCGCGCGTAGAAGCGGGTTCGGGTCCCGTCGTGTACTGGATGTTCAGAGATCAACGGGTGAGAGACAATTGGGCTCTGATCCACGCCGTTGCTGAGGCCAACAAAGCCAACGTTCCCGTTGCCGTTGTTTTCAATCTCTTCCACACCTTTCTTGGCGCCAAATCCCGTCATTTAGGGTTCATGCTCAGGGGCTTGCGCCAATTGTGCCACCGTATGCAACACTCTCTTCAAATCCCCTTTTTCTTATTCCAGGGAGAGGCGGAGGAGACTGTGCCAAAGTTTCTTAGAGAATGTGGAGCTTCACTTTTGGTGACGGATTTCTCACCTTTGCGGGATGTAAGGAGGTGTAAAGAAGAGATATGCAAGAGGGTAAGTGATTCAGTTACGGTGCATGAAGTGGATGCTCACAATGTTGTGCCCCTTTGGGTTGCCTCTGATAAATTGGAGTACAGTGCTAAGACCATCAGGGCCAAGATAAACAAAAGGCTTCCTGAGTATCTCATTGATTTCCCTGACATTGAAATTGAACCACCAACTAGGAAGTGGGTCGTTACTGAGAACCATTCCATTGACTGGGATGATCTCATTGCTGATGTGTTAAGGAGAGGAGCTGAGGTTCCTGAAGTTGATTGGTGTGAGCCAGGGGAAATTGCAGCAAGGGAAGTATTGATGGGAAGTGAAAATGGATTCTTGACTAAAAGGTTGAGAGGTTATTCCCTAGACCGCAACAACCCGTGCAACCCCAATGCACTTTCTGGCTTATCTCCCTATTTGCATTTTGGACAGATATCTGCTCAGCGATGTGCTTTAGAAGCACGTAAGCGGCGAAATTCACATCCACAAGCAATTGATGCTTTCTTGGAGGAGTTGATTGTGCGGAGAGAGCTTGCTGATAACTATTGCTTCTACCAGCCTCATTATGATTCCTTAAAAGGTGCATGGGGGTGGGCTCAGAACACGTTAATCGAACATGCCACCGATAAGCGAGAACATATTTACACGAGGGAGCAGTTGGAGAAGGCACAGACTGCTGATCCTCTCTGGAATGCTTCTCAGCTGGAGATGGTTCACTATGGGAAAATGCATGGTTTTATGCGAATGTATTGGGCAAAGAAGATACTTGAGTGGACACGAGGACCTGAAGAAGCCCTTGAGATATCTCTATATTTAAATGACAAGTATGAATTAGATGGGAGAGATCCAAATGGTTATGTTGGCTGCATGTGGTCAATATGTGGGGTTCATGATCAGGTTCGCCTACATTGTTCTCATTGTATACAATTTAATTTGAATGTTAAGGAAGAATGTTTTTTGGTATGTAGTGTTTTTATTTTTTTATCTCTGTAA 1410 0.4624 MASAASPMTVQAGRVRTLKEGSRVEAGSGPVVYWMFRDQRVRDNWALIHAVAEANKANVPVAVVFNLFHTFLGAKSRHLGFMLRGLRQLCHRMQHSLQIPFFLFQGEAEETVPKFLRECGASLLVTDFSPLRDVRRCKEEICKRVSDSVTVHEVDAHNVVPLWVASDKLEYSAKTIRAKINKRLPEYLIDFPDIEIEPPTRKWVVTENHSIDWDDLIADVLRRGAEVPEVDWCEPGEIAAREVLMGSENGFLTKRLRGYSLDRNNPCNPNALSGLSPYLHFGQISAQRCALEARKRRNSHPQAIDAFLEELIVRRELADNYCFYQPHYDSLKGAWGWAQNTLIEHATDKREHIYTREQLEKAQTADPLWNASQLEMVHYGKMHGFMRMYWAKKILEWTRGPEEALEISLYLNDKYELDGRDPNGYVGCMWSICGVHDQVRLHCSHCIQFNLNVKEECFLVCSVFIFLSL 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo8g02238 469 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 29 162 IPR006050 -
Pumo8g02238 469 Gene3D HUPs 8 156 IPR014729 -
Pumo8g02238 469 FunFam Deoxyribodipyrimidine photolyase 9 156 - -
Pumo8g02238 469 NCBIfam deoxyribodipyrimidine photo-lyase 9 438 IPR008148 GO:0003904|GO:0006281
Pumo8g02238 469 FunFam Deoxyribodipyrimidine photolyase 157 330 - -
Pumo8g02238 469 Pfam DNA photolyase 31 192 IPR006050 -
Pumo8g02238 469 FunFam Deoxyribodipyrimidine photolyase 331 443 - -
Pumo8g02238 469 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 331 446 - -
Pumo8g02238 469 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 223 440 IPR036134 -
Pumo8g02238 469 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 30 214 IPR036155 -
Pumo8g02238 469 Gene3D - 157 330 - -
Pumo8g02238 469 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 4 438 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo8g02238 K01669 - gmx:100170749 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02238 8 59510288 59514036 Pumo8g02238 8 59510288 59514036 ECH