Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0067 ATGGCTTCCGCACCGTCGCCAATGTCGGTCAATCCGGGTCGCATTCGGACCCTGAAAGAAGGGTCGCCCCGTTCCAACGGCGAATCGGGTCCCGTCGTGTACTGGATGTTCAGAGATCAACGGGTTCGAGACAACTGGGCTCTTATCCACGCCGTTCACCAAGCCAACAAAGCCAACGTTCCCGTCGCCGTCGTTTTCAATCTCTTCGATCACTTTCTGGGTGCAAAGTCTCGTCATCTAGGGTTCATGCTCAGGGGTTTACGCCAATTGTGTCACCAACTTCAACACACTCTTCAAATCCCCTTTTTCTTGTTCCGGGGTGAAGCAGAGGAGACTGTGTCGAAATTTGTTAGGGAATGCGGGGCTTCATTGTTGGTGACGGACATGTCACCCTTGCGTGAAGTTCGGAGGTGCAAATCGGAGATTTGTGAGAGGGTTGGTGATTCGGTGATGGTGCATGAAGTGGATGCTCACAATGTGGTGCCAATTTGGGTGGCTTCTGATAAATTGGAGTACAGTGCTAGGACCATAAGGGGGAAGATTAACAAAAAGCTTCCTGAGTATCTCACTGATTTCCCTGACATTGAACCACAATCTAGAAAATGGGTTGTCACCGAGGACCGCATCATCGACTGGGATGATCTCATTGCTGAGGTCTTGAGAGGGGCTGAGGTTCCTGAAGTTGATTGGTGTGTGCCAGGGGAAATTGCAGCAATGGAAGTGTTGATGGGAAGTAAAAATGGATTCTTGACTAAAAGGTTGAAAAGTTACCTAGACCGCAATAACCCGTGTAAAACCACTGCCCTTTCTGGTTTATCGCCCTATTTGCATTTTGGACAGATATCTGCTCAAAGGTGTGCTTTGGAAGCACGTAAGCTGCGAACATCATGCCCTCAGGCGGCCGATGCTTTCTTGGAGGAGTTAGTTGTGCGGAGAGAACTTGCTGATAACTTCTGTTACTATCAGCCTCAGTATGATTCATTACAAGGAGCATGGGATTGGGCTCGTAAGACCTTACTCGATCATGCTGCTGATAAGAGAGAACATATCTACTCGAAGGAACAATTGGAGAAAGCACAGACTGCAGATCGTCTATGGAATGCTTCTCAGCTGGAGATGGTTCATTTTGGGAAAATGCATGGTTTTATGCGAATGTATTGGGCAAAGAAGATACTAGAGTGGACAAGAGGACCTGAAGAAGCACTTGAGATATGTATTTATTTAAATGATAAGTATGAAATAGATGGGAGGGATCCAAATGGTTATTGTGGCTGCATGTGGTCAATATGTGGGGTCCATGATCAGGGTTGGCGAGAGCGACCCATTTTTGGGAAAATTCGATACATGAACTATGAAGGCTGCAAAAGAAAATTTGATGTTGAGAGATACATTGCATATGTCAACAAAGTAGTTAGTGAGATGAAAAAGAGAAAGGCTGAAAACTTGATATCTCAAAAGGAGAAACTACTCCGCAGTTGCGATCCTGAAGATTGA 1494 0.4618 MASAPSPMSVNPGRIRTLKEGSPRSNGESGPVVYWMFRDQRVRDNWALIHAVHQANKANVPVAVVFNLFDHFLGAKSRHLGFMLRGLRQLCHQLQHTLQIPFFLFRGEAEETVSKFVRECGASLLVTDMSPLREVRRCKSEICERVGDSVMVHEVDAHNVVPIWVASDKLEYSARTIRGKINKKLPEYLTDFPDIEPQSRKWVVTEDRIIDWDDLIAEVLRGAEVPEVDWCVPGEIAAMEVLMGSKNGFLTKRLKSYLDRNNPCKTTALSGLSPYLHFGQISAQRCALEARKLRTSCPQAADAFLEELVVRRELADNFCYYQPQYDSLQGAWDWARKTLLDHAADKREHIYSKEQLEKAQTADRLWNASQLEMVHFGKMHGFMRMYWAKKILEWTRGPEEALEICIYLNDKYEIDGRDPNGYCGCMWSICGVHDQGWRERPIFGKIRYMNYEGCKRKFDVERYIAYVNKVVSEMKKRKAENLISQKEKLLRSCDPED* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0067 497 Gene3D - 158 327 - -
Lja2g0067 497 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 31 210 IPR036155 -
Lja2g0067 497 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 328 478 - -
Lja2g0067 497 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 223 474 IPR036134 -
Lja2g0067 497 ProSitePatterns DNA photolyases class 2 signature 2. 431 450 IPR032673 -
Lja2g0067 497 TIGRFAM phr2: deoxyribodipyrimidine photolyase 8 466 IPR008148 GO:0003904|GO:0006281
Lja2g0067 497 ProSitePatterns DNA photolyases class 2 signature 1. 304 318 IPR032673 -
Lja2g0067 497 Gene3D HUPs 8 157 IPR014729 -
Lja2g0067 497 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 30 163 IPR006050 -
Lja2g0067 497 MobiDBLite consensus disorder prediction 1 28 - -
Lja2g0067 497 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 8 491 - -
Lja2g0067 497 Pfam DNA photolyase 32 193 IPR006050 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0067 K01669 - gmx:100170749 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0067 2 516747 520065 Lja2g0067 2 516747 520065 ECH