Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02103 ATGGCTTCCACACCGTCATCAATGTCGGTAAACCCGGGTCGCATTCGGACCCTGAAAGAAGGGTCGAACCGTTCCGATGGAAAAACGGGTCCTGGCCCCGTGGTGTATTGGATGTTCAGAGATCAACGGGTGAGAGACAATTGGGCTCTCATCCACGCCGTTCATCAAGCCAACAAAACCAACGTTCCCGTAGCCGTTGTTTTCAATCTCTTCGACCACTTTCTGGGTGCAAAGTCTCGTCATTTAGGGTTCATGCTAAGGGGTTTACACCAATTGTGCCACCAACTGCAACACACTCTTCAAATCCCCTTTTTCTTGTTTCGGGGTGAGGCAGAGGAGACTGTATCGAAATTTGTGAGAGAATGTGGAGCGTCACTGTTGGTGACAGACATGTCACCCTTACGTGAAGTGAGGAAATGCAAGGAGGAGATTTGCAAGAGGGTAAGTGATTTGGTGACGGTGCATGAAGTGGATGCACACAACGTTGTACCCCTTTGGGTGGCTTCTGATAAATTGGAGTACAGTGCTAGGACCATAAGGGGAAAGATAAATAAAAAGCTTTCTGAGTATCTCGTTGATTTTCCTAATGTTGAAACACCAACTAGGAAATGGGTCATCACTGAGGAACACTCCATTGACTGGGATGATCTCATTGCTGAGGTGTTGAGGAGTGGAGCCGAGGTTCCTGAAGTTGATTGGTGTGAGCCCGGGGAAAATGCTGCAATGGAAGTATTGATGGGAAGTAAAAATGGATTCTTGACTAAAAGGTTGAAAAATTATTCTGTAGATCGCAACAACCCATGTAAACCCACTGCACTTTCTGGTTTATCTCCCTATTTGCATTTTGGTCAGATATCTGCTCAGAGATGTGCTTTTGAAGCACGTAAGATTCGAACTTCAAATCCTCAGGCGATTGATACTTTCTCGGAAGAGTTGATTGTGAGAAGAGAACTTGCTGATAACTTTTGCTACTATCAGCCTCAATACGATTCATTACAAGGAGCATGGGAGTGGGCTCGTAAGACCTTACTCGATCATGCCACTGATAAGCGAGAACATATTTACTCGAGGGAGCAATTGGAGAAAGCACAGACTGCTGATCCACTCTGGAATGCTTCTCAGCTAGAGATGGTCCACTTTGGGAAAATGCATGGTTTTATGCGAATGTATTGGGCAAAGAAGATACTTGAGTGGACAAGAGGACCTGAAGAAGCCCTTGAGATATCTATTTATTTAAATGATAAGTATGAAATAGATGGGAGGGATCCAAATGGTTATGTTGGCTGCATGTGGTCAATATGTGGGGTTCATGATCAGGGTTGGCGAGAGCGGCCAGTTTTTGGGAAAATTCGATACATGAATTATGCAGGCTGCAAAAGAAAATTTGATGTTGAAAAATACATTGCATATGTCAATAAATTAGTTGGTGAGCTGAGAAAGAGAAAGGCTGAAAGCTTGCAATCTCAAAAGGAGAAAGTACTCCGAAATTGTGATCCTTAA 1500 0.4407 MASTPSSMSVNPGRIRTLKEGSNRSDGKTGPGPVVYWMFRDQRVRDNWALIHAVHQANKTNVPVAVVFNLFDHFLGAKSRHLGFMLRGLHQLCHQLQHTLQIPFFLFRGEAEETVSKFVRECGASLLVTDMSPLREVRKCKEEICKRVSDLVTVHEVDAHNVVPLWVASDKLEYSARTIRGKINKKLSEYLVDFPNVETPTRKWVITEEHSIDWDDLIAEVLRSGAEVPEVDWCEPGENAAMEVLMGSKNGFLTKRLKNYSVDRNNPCKPTALSGLSPYLHFGQISAQRCAFEARKIRTSNPQAIDTFSEELIVRRELADNFCYYQPQYDSLQGAWEWARKTLLDHATDKREHIYSREQLEKAQTADPLWNASQLEMVHFGKMHGFMRMYWAKKILEWTRGPEEALEISIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWRERPVFGKIRYMNYAGCKRKFDVEKYIAYVNKLVGELRKRKAESLQSQKEKVLRNCDP* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02103 499 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 332 482 - -
Rops1g02103 499 FunFam Deoxyribodipyrimidine photolyase 160 331 - -
Rops1g02103 499 MobiDBLite consensus disorder prediction 1 29 - -
Rops1g02103 499 ProSitePatterns DNA photolyases class 2 signature 2. 435 454 IPR032673 -
Rops1g02103 499 Pfam DNA photolyase 34 196 IPR006050 -
Rops1g02103 499 ProSitePatterns DNA photolyases class 2 signature 1. 308 322 IPR032673 -
Rops1g02103 499 Gene3D - 160 331 - -
Rops1g02103 499 NCBIfam deoxyribodipyrimidine photo-lyase 8 470 IPR008148 GO:0003904|GO:0006281
Rops1g02103 499 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 33 203 IPR036155 -
Rops1g02103 499 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 3 492 - -
Rops1g02103 499 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 32 165 IPR006050 -
Rops1g02103 499 Gene3D HUPs 8 159 IPR014729 -
Rops1g02103 499 MobiDBLite consensus disorder prediction 1 18 - -
Rops1g02103 499 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 224 482 IPR036134 -
Rops1g02103 499 FunFam Deoxyribodipyrimidine photolyase 332 479 - -
Rops1g02103 499 FunFam Deoxyribodipyrimidine photolyase 9 159 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02103 K01669 - gmx:100170749 870.152
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops1g02103 1 42122286 42125992 Rops1g02103 1 42122286 42125992 ECH