Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bva08g00267 | ATGGCCTCCCTAAATACAACAATGTCAGTCCAATCGGGTCGAATTAGAACGCTGAAACAAGGATCGCCGCAGCTTGACGGAGTGGGGGGGCCTGTTGTATATTGGATGTTTAGAGATCAACGGATGAAAGACAATTGGGCTCTCATCCACGCCCTTCGTCAAGCCAACAAAGCCAACGTTCCCGTGGCCGTCGTTTTCAATCTATTCGATCAATTTCTGGGCGCGAAAGCCCGccatttagggtttatgttgAGGGGTTTGCGGCAATTTTCGCAGGAAATTGAACAGGCTCTTCAAAtcccctttttcttgtttcggGGAGAGGCAGAGGAGAATGTGCCTAATTTTATCAGAGAATGCGGAGCTTCGCTATTAGTTACGGACTTTTCACCTTTGAGACAAGTTCGGAAGTGCAAAGAGGAGATTTGCAAGAGGGTAAACGATTCTGTTACCATACATGAAGTTGATGCTCACAACATAGTACCCCTTTGGGTAACCTCGGACAAGTTGGAGTACAGTGCTAGGACCATCAGAGGAAAGATAAACAAAAGACTTTCTGAGTACCTTATTGATTTTCCTAGCATTGAACCTCCATCTAGGAAGTGGGACACTAAGAATGAGTTAATCGATTGGGATAGTCTCATTGCTGATGTATTAAGGAGAGGAGCGGATGTTCCTGAAATACATTGGTGTGAACCTGGAGAAAATGCTGCAATGCAAGTTCTGATGGGAAGTGAAAATGGATTCTTGACTAAGAGGTTGAAAACTTATACCGGCGACCGGAATGACCCAGCTAAGCCTAGTGCGCTTTCTGGTTTGTCTCCCTATCTGCATTTTGGACAGATATCTGCTCAGCGTTGTGCCTTAGAAGCACGTAAGCTCCGACATTCATGTCCTCAGGCAGTTGATACTTTTTTGGAGGAGTTGATTGTGCGGAGAGAACTTGCCGATAACTTTTGCTTCTATCAGCCACATTATGATTCATTACAGGGAGCATGGGAGTGGGCTCGTAAGACTTTACTGGACCATGCCAAGGATAAGCGAGAACATATTTACTCGAgggaccaattggagaaggcACAAACAACTGATCATCTCTGGAATGCTTCTCAGCTGGAGATGGTTTACCATGGGAAAATGCATGGTTTTATGCGAATGTATTGGGCTAAGAAGATACTTGAGTGGACAAGAGCACCCGAAGAAGCGCTGGAGACATCCATATATTTAAACGACAAGTATGAAATAGATGGGAGAGATCCAAATGGTTATGTTGGCTGCATGTGGTCAATATGTGGCGTGCATGATCAGGGTTGGCGCGAACGACCAATTTTTGGGAAAATTCGATACATGAACTTTGAAggctgcaaaagaaaatttgacgTCGATAAATATATTGTGTATGTCAATAAATTAGTTGGTggacagaagaagagaagggcCGAAAACTTGCTatctgaaaaggaaaaaACGAAAGCCCTTTTTATCCTGTATTCTCTCATTGCTGGACTCTTCCTCTCCCAGGATGTATACCTTACACGCTA | 1541 | 0.4095 | MASLNTTMSVQSGRIRTLKQGSPQLDGVGGPVVYWMFRDQRMKDNWALIHALRQANKANVPVAVVFNLFDQFLGAKARHLGFMLRGLRQFSQEIEQALQIPFFLFRGEAEENVPNFIRECGASLLVTDFSPLRQVRKCKEEICKRVNDSVTIHEVDAHNIVPLWVTSDKLEYSARTIRGKINKRLSEYLIDFPSIEPPSRKWDTKNELIDWDSLIADVLRRGADVPEIHWCEPGENAAMQVLMGSENGFLTKRLKTYTGDRNDPAKPSALSGLSPYLHFGQISAQRCALEARKLRHSCPQAVDTFLEELIVRRELADNFCFYQPHYDSLQGAWEWARKTLLDHAKDKREHIYSRDQLEKAQTTDHLWNASQLEMVYHGKMHGFMRMYWAKKILEWTRAPEEALETSIYLNDKYEIDGRDPNGYVGCMWSICGVHDQGWRERPIFGKIRYMNFEGCKRKFDVDKYIVYVNKLVGGQKKRRAENLLSEKEKTKALFILYSLIAGLFLSQDVYLTR | 513 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bva08g00267 | 513 | ProSitePatterns | DNA photolyases class 2 signature 2. | 432 | 451 | IPR032673 | - | |
| Bva08g00267 | 513 | Gene3D | HUPs | 8 | 157 | IPR014729 | - | |
| Bva08g00267 | 513 | ProSiteProfiles | Photolyase/cryptochrome alpha/beta domain profile. | 30 | 163 | IPR006050 | - | |
| Bva08g00267 | 513 | ProSitePatterns | DNA photolyases class 2 signature 1. | 305 | 319 | IPR032673 | - | |
| Bva08g00267 | 513 | Gene3D | - | 158 | 328 | - | - | |
| Bva08g00267 | 513 | SUPERFAMILY | Cryptochrome/photolyase FAD-binding domain | 220 | 466 | IPR036134 | - | |
| Bva08g00267 | 513 | Pfam | DNA photolyase | 32 | 194 | IPR006050 | - | |
| Bva08g00267 | 513 | SUPERFAMILY | Cryptochrome/photolyase, N-terminal domain | 31 | 210 | IPR036155 | - | |
| Bva08g00267 | 513 | PANTHER | DEOXYRIBODIPYRIMIDINE PHOTOLYASE | 7 | 490 | - | - | |
| Bva08g00267 | 513 | TIGRFAM | phr2: deoxyribodipyrimidine photolyase | 8 | 466 | IPR008148 | GO:0003904|GO:0006281 | |
| Bva08g00267 | 513 | Gene3D | DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 | 329 | 479 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bva08g00267 | K01669 | - | mnt:112093873 | 819.305 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Bva08g00267 | 08 | 1289922 | 1293363 | Bva08g00267 | 08 | 1289922 | 1293363 | ECH |