Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g07777 ATGGCTTCCACACCGTCGCCACCAATGTCAGTGAACCCCGGTCGCATTCGAACCTTGAAAGAAGGTTCTGGAAAAACCGGCCCCGTCGTGTACTGGATGTTCAGAGATCAACGGTTGAAAGACAACTGGGCTCTCATCCACGCCGTTCATCAAGCCAACAAATCCAACGTTCCAGTAGCCATTGTTTTCAATCTCTTCAACAGTTTTATTGGCGCAAAGGCTCGTCATTTAGGGTTTATGCTCAGGGGTTTGCGCCAATTGTGTCACCAACTTCAACACACTCTTCAAATCCCCTTTTTCTTGTTTCAGGGTGAGGCTGAGGAAACTGTATCGAAATTTGTTAGAGAATGTGGAGCGTCTCTTTTGGTGACAGATATGTCACCATTAAGAGAATTGAAGAAATGCAAAGCTGAGATTTGTGAGAGGGTTGGTGATTTGGTTACTGTTCATGAAGTTGATGCTCACAATATTGTGCCTCTTTGGGTAGCTTCTGAGAAATTGGAGTATAGTGCTAGAACATTAAGGGGGAAGATAAACAAAAAGCTTCCTGAATATCTTGTTGATTTTCCCATTATTGAACCACCAACTACGAAATGGGTCAATACTGAGGATCATACTATAGACTGGGATGATATTATTGCTCAAGTACTAAGGAGGGGAGCCGAGGTTCCTGAAGTTAGTTGGTGTGAGCCTGGAGAAATTGCTGCTATGGAAGTATTGATGGGAAGTAAGAATGGATTCTTAAGTAAAAGGTTGAGAAGTTATTCAACCGATCGCAATAACCCTTGTAAACCAACTGCACTTTCGGGTTTATCTCCTTATTTGCATTTCGGACAGATATCTGCTCAAAGATGTGCTTTAGAAGCTCGTAAATTAAGAGCTTCACATCCTCAGGCTGTTGATACTTTCCTGGAGGAGTTGATTGTCAGGAGAGAACTTGCTGATAACTTTTGCTTCTATCAACTTCATTATGATTCACTAAAAGGAGCCTGGGAGTGGGCTCGTAAAACCTTACTCGATCATGCCTCGGATAAGAGAGAACATGTTTACACGAGGGAGCAGTTGGAGAAAGCTAAGACTGCTGATCCTCTCTGGAATGCTTCCCAACTGGAGATGGTTCACTATGGGAAAATGCATGGTTTTATGAGAATGTATTGGGCAAAGAAGATTCTTGAATGGACAAAAGGACCTGAAGAAGCACTTGAGATATGTATATATTTAAATGATAAGTATGAAATGGATGGGAGGGATCCAAGTGGTTATGTTGGCTGCATGTGGTCTATATGTGGAGTGCATGATCAGGGTTGGCGAGAGCGTCCCATTTTCGGGAAAATTCGGTACATGAATTACAAAGGTTGCAAAAGAAAATTTGATGTTGACAAATACATTGCATATGTTAATAAATTAGTCGGTGAGCTCAGAAAGAGAAAGGCAGAACATTTATTGTCTGAGAAGGAGAAAGTACTTCGCCGTTCTTATCCTGAGGATTGA 1491 0.4199 MASTPSPPMSVNPGRIRTLKEGSGKTGPVVYWMFRDQRLKDNWALIHAVHQANKSNVPVAIVFNLFNSFIGAKARHLGFMLRGLRQLCHQLQHTLQIPFFLFQGEAEETVSKFVRECGASLLVTDMSPLRELKKCKAEICERVGDLVTVHEVDAHNIVPLWVASEKLEYSARTLRGKINKKLPEYLVDFPIIEPPTTKWVNTEDHTIDWDDIIAQVLRRGAEVPEVSWCEPGEIAAMEVLMGSKNGFLSKRLRSYSTDRNNPCKPTALSGLSPYLHFGQISAQRCALEARKLRASHPQAVDTFLEELIVRRELADNFCFYQLHYDSLKGAWEWARKTLLDHASDKREHVYTREQLEKAKTADPLWNASQLEMVHYGKMHGFMRMYWAKKILEWTKGPEEALEICIYLNDKYEMDGRDPSGYVGCMWSICGVHDQGWRERPIFGKIRYMNYKGCKRKFDVDKYIAYVNKLVGELRKRKAEHLLSEKEKVLRRSYPED 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g07777 496 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 27 160 IPR006050 -
Vifa1g07777 496 Pfam DNA photolyase 29 187 IPR006050 -
Vifa1g07777 496 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 327 477 - -
Vifa1g07777 496 FunFam Deoxyribodipyrimidine photolyase 155 326 - -
Vifa1g07777 496 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 7 487 - -
Vifa1g07777 496 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g07777 496 FunFam Deoxyribodipyrimidine photolyase 327 474 - -
Vifa1g07777 496 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 219 481 IPR036134 -
Vifa1g07777 496 Gene3D - 155 326 - -
Vifa1g07777 496 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 28 200 IPR036155 -
Vifa1g07777 496 FunFam Deoxyribodipyrimidine photolyase 10 154 - -
Vifa1g07777 496 ProSitePatterns DNA photolyases class 2 signature 2. 430 449 IPR032673 -
Vifa1g07777 496 ProSitePatterns DNA photolyases class 2 signature 1. 303 317 IPR032673 -
Vifa1g07777 496 Gene3D HUPs 9 154 IPR014729 -
Vifa1g07777 496 NCBIfam deoxyribodipyrimidine photo-lyase 10 465 IPR008148 GO:0003904|GO:0006281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g07777 K01669 - gmx:100170749 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g07777 1 1214438149 1214440683 Vifa1g07777 1 1214438149 1214440683 ECH