LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca06g01730	ATGGCTTCCGCAGCGTCGGCGATGTCGGTTCAAGCGGGTCGGGTTCGGACCCTGAAAGAAGGGCTGCGCGGCGAAGCGGGTGCGGGTCCCGTTGTGTACTGGATGTTCAGAGATCAACGGGTGAGAGACAATTGGGCTCTGATCCACGCCGTTGCTGAGGCCAACAAAGCCAACGTACCCGTGGCCGTTGTTTTCAATCTCTTCCACAGCTTCCTTGGCGCCAAATCCCGTCATCTAGGGTTCATGCTCAGAGGCTTGCGCCAACTGTGCCACCGTATGCAACACACTCAAATCCCCTTTTTCTTGTTCCAGGGTGAGGCAGAGGAGACTGTGCCAAAGTTTCTTAGAGAATGTGGTGCTTCCCTTTTGGTGACGGATTTCTCACCGTTGCGGGAAGTGCTCAAGTGTAAAGAAGAGATTTGCAAGAGGGTTAGCGATTCCGTTACTGTGCATGAGGTGGATGCTCACAACGTTGTTCCCCTTTGGGTTGCCTCTGATAAGTTGGAATACAGTGCTAAGACCATTAGGGCTAAGATAAACAAAAGGCTTTCTGAGTATCTCATTGATTTCCCTGACATTGAATTAGAACCACCAACTAGGAAGTGGGTTCTTACTGACAACCATTCCATTGACTGGGATGATCTCATTGCTGACGTGTTAAGGAGGGGTGCTGAGGTTCCTGAAGTTGATTGGTGTGAGCCAGGGGAAAATGCGGCGAGGGAAGTGTTGATGGGAAGTGAAAATGGATTCTTGACCAAGAGGTTGAAAGGTTATGCCATGGATCGCAACAACCCGTGCCACCCCAATGCGCTTTCTGGCTTATCTCCCTATTTGCATTTTGGACAGATATCTGCTCAGCGATGTGCTTTAGAAGCACGTAAGCTGCGAAATTCACATCCTCAAGCAATTGATGCTTTCTTGGAGGAGTTGATTGTGCGGAGAGAGCTTGCTGACAACTTTTGCTTCTACCAGCCTCTTTATGATTCATTAAAAGGAGCATGGGGCTGGGCTCAGAACACCTTAATTCAGCATGCCACCGATAAGCGAGAACATATTTACACGAGGGAGCAGTTGGAGAAGGCACAGACTGCTGATCCTCTCTGGAATGCTTCTCAGCTGGAGATGGTTCACTACGGAAAGATGCACGGTTTTATGCGAATGTATTGGGCAAAGAAGATACTTGAGTGGACGCGAGGACCTGAAGAAGCCCTTGAGATATCTCTATATTTAAATGACAAGTATGAATTAGATGGGAGAGATCCAAGTGGTTATGTTGGTTGCATGTGGTCAATATGCGGGGTTCATGATCAGGGGTGGAAAGAGCGACCCGTTTTTGGGAAAATTCGATACATGAATTATGCAGGCTGCAAAAGAAAATTTGATGTTGATAAATACGTTGCATATGTCAATAAATTAGTTCGTGAGCTTAAAAAGAGAAAGGCTGGAAACTTGTTATCTCAAAAGGAGAAAGCACGCCGCTGTTGTGATCCTGAAGATTGA	1500	0.4747	MASAASAMSVQAGRVRTLKEGLRGEAGAGPVVYWMFRDQRVRDNWALIHAVAEANKANVPVAVVFNLFHSFLGAKSRHLGFMLRGLRQLCHRMQHTQIPFFLFQGEAEETVPKFLRECGASLLVTDFSPLREVLKCKEEICKRVSDSVTVHEVDAHNVVPLWVASDKLEYSAKTIRAKINKRLSEYLIDFPDIELEPPTRKWVLTDNHSIDWDDLIADVLRRGAEVPEVDWCEPGENAAREVLMGSENGFLTKRLKGYAMDRNNPCHPNALSGLSPYLHFGQISAQRCALEARKLRNSHPQAIDAFLEELIVRRELADNFCFYQPLYDSLKGAWGWAQNTLIQHATDKREHIYTREQLEKAQTADPLWNASQLEMVHYGKMHGFMRMYWAKKILEWTRGPEEALEISLYLNDKYELDGRDPSGYVGCMWSICGVHDQGWKERPVFGKIRYMNYAGCKRKFDVDKYVAYVNKLVRELKKRKAGNLLSQKEKARRCCDPED	499

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca06g01730	499	Gene3D	DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3	330	480	-	-
	Cca06g01730	499	Pfam	DNA photolyase	31	191	IPR006050	-
	Cca06g01730	499	ProSitePatterns	DNA photolyases class 2 signature 1.	306	320	IPR032673	-
	Cca06g01730	499	PANTHER	DEOXYRIBODIPYRIMIDINE PHOTOLYASE	6	492	-	-
	Cca06g01730	499	TIGRFAM	phr2: deoxyribodipyrimidine photolyase	8	468	IPR008148	GO:0003904\|GO:0006281
	Cca06g01730	499	SUPERFAMILY	Cryptochrome/photolyase FAD-binding domain	222	477	IPR036134	-
	Cca06g01730	499	ProSiteProfiles	Photolyase/cryptochrome alpha/beta domain profile.	29	161	IPR006050	-
	Cca06g01730	499	Gene3D	-	156	329	-	-
	Cca06g01730	499	SUPERFAMILY	Cryptochrome/photolyase, N-terminal domain	30	213	IPR036155	-
	Cca06g01730	499	Gene3D	HUPs	8	155	IPR014729	-
	Cca06g01730	499	ProSitePatterns	DNA photolyases class 2 signature 2.	433	452	IPR032673	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca06g01730	K01669		-	gmx:100170749	957.207

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca06g01730	06	32600043	32603889	Cca06g01730	06	32600043	32603889	ECH