LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal23g1212	ATGGATTTATCAATGTCAGTTCAATTGGGTCGGATTCGGACCCTGAAAGAAGGGTTGACCCATTCGGATGGAAAACCGGGTCCCGTTGTGTACTGGATGTTCAGGGATCAAAGGATCAGAGACAATTGGGCTCTCATCCACGCCGTTCATCAAGCCAACAAATCTAACGTTCCTGTTGCCGTTGTTTTCAACCTCTTTCATCAGTTTCTTGGCGCGAAATCCCGTCAATTAGGGTTTATGCTCAGAGGATTGCGCCAATTGTCTCACCAATTGAAAAACAATCTTCAAATACCTTTTTTCTTGTTTCGCGGAGAAGCAGAGGAAACTGTAGTGAAATTTCTGAGAGAATGTGGAGCTTCATTGTTGGTGACAGATTTTTCGCCTTTGCGAGAAGTGCGGAGGTGCAAAGAGGAGATTTTGAAGAGGGTAAGCAGTTTGATTACCATACATGAAGTGGATGCTCACAATGTAGTACCCCTTCGGGTCGCCTCTGAAAAATTGGAGTACAGCGCTAGGACCTTAAGGGGAAAGATTAACAAAAGGCTTTCTGAGTATCTTATTGATTTTCCTACAATTGAACCACCAACTAGGAAATGGGTCACCGCTGGGGAGCAGTGCATTAACTGGGATGACCTCATTGCTGATGTATTGAGGAATGGAGCTGAGGTTCCTGAAATTAATTGGTGTGAGCCCGGAGAAATTGCTGCAATGGAAGTATTGATGGGAAGTGAAAATGGATTTTTGACAAAAAGGTTAAAAAATTATTCTGTAGATCGGAACAACCCATGCAAACCCACTGCCCTTTCTGGTTTATCTCCCTATTTGCACTTTGGACAGATATCTTCTCAGCGGTGTGCTTTAGAAGCACGCAAGCTGCGAACTTCACATCCTCAGGCAGTTGATGCTTTCTTGGAGGAGTTAATTGTGCGGAGAGAACTTGCTGATAACTTTTGCTTCTATCAGCCACATTATGATTCATTACAAGGAGCATGGGAGTGGGCTCGCAAGACCTTAATGGATCATGCCACTGACAAGCGAGAACATATTTACTCGCGAGTCTCATTTTCCTCTTCTTCTAAATATATATTGATTTTGTTTACTGGCAAGCTAATATGTAGTGTTTGTAATTCCAGGAGGGAGCAGTTGGAGAAAGCCCAGACTGCTGATCCTCTCTGGAATGCTTCTCAGCTGGAGATGATTTACTATGGGAAAATGCATGGTTTCATGCGAATGTACTGGGCAAAGAAGATACTTGAGTGGACAAGAGGACCTGAAGAAGCACTTGAGATAGCCATATATCTCAATGATAAGTATCAAATAGATGGCAGGGATCCAAGTGGATATGTTGGCTGCATGTGGTCAATATGTGGAGTTCATGATCAGGGTTGGCGAGAGCGGCCTGTATTCGGGAAGATACGATACATGAACTATGCAGGCTGCAAAAGAAAATTCGACGTCGACAGTTACATTGCATATGTGAATTTATTAGTTGGTGAGGTGAGAAAGAGAAAAGCTGAAAACTTGCTATCTGGAAAGGAGAAAGTACTCCGACGTTAG	1557	0.4335	MDLSMSVQLGRIRTLKEGLTHSDGKPGPVVYWMFRDQRIRDNWALIHAVHQANKSNVPVAVVFNLFHQFLGAKSRQLGFMLRGLRQLSHQLKNNLQIPFFLFRGEAEETVVKFLRECGASLLVTDFSPLREVRRCKEEILKRVSSLITIHEVDAHNVVPLRVASEKLEYSARTLRGKINKRLSEYLIDFPTIEPPTRKWVTAGEQCINWDDLIADVLRNGAEVPEINWCEPGEIAAMEVLMGSENGFLTKRLKNYSVDRNNPCKPTALSGLSPYLHFGQISSQRCALEARKLRTSHPQAVDAFLEELIVRRELADNFCFYQPHYDSLQGAWEWARKTLMDHATDKREHIYSRVSFSSSSKYILILFTGKLICSVCNSRREQLEKAQTADPLWNASQLEMIYYGKMHGFMRMYWAKKILEWTRGPEEALEIAIYLNDKYQIDGRDPSGYVGCMWSICGVHDQGWRERPVFGKIRYMNYAGCKRKFDVDSYIAYVNLLVGEVRKRKAENLLSGKEKVLRR	518

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal23g1212	518	Gene3D	-	155	326	-	-
	Lal23g1212	518	SUPERFAMILY	Cryptochrome/photolyase, N-terminal domain	28	199	IPR036155	-
	Lal23g1212	518	Gene3D	HUPs	6	154	IPR014729	-
	Lal23g1212	518	ProSitePatterns	DNA photolyases class 2 signature 2.	457	476	IPR032673	-
	Lal23g1212	518	ProSiteProfiles	Photolyase/cryptochrome alpha/beta domain profile.	27	160	IPR006050	-
	Lal23g1212	518	PANTHER	DEOXYRIBODIPYRIMIDINE PHOTOLYASE	378	515	-	-
	Lal23g1212	518	PANTHER	DEOXYRIBODIPYRIMIDINE PHOTOLYASE	3	356	-	-
	Lal23g1212	518	Pfam	DNA photolyase	29	191	IPR006050	-
	Lal23g1212	518	ProSitePatterns	DNA photolyases class 2 signature 1.	303	317	IPR032673	-
	Lal23g1212	518	SUPERFAMILY	Cryptochrome/photolyase FAD-binding domain	219	490	IPR036134	-
	Lal23g1212	518	Gene3D	DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3	375	504	-	-
	Lal23g1212	518	Gene3D	DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3	327	360	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal23g1212	K01669		-	gmx:100170749	818.535

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal23g1212	23	13390127	13393874	Lal23g1212	23	13390127	13393874	ECH