Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0375 ATGGCTACAACACCGTCGCCGCCGTCAATGTTGCCGTCGGTGAATTCGGGTCGCATTCGGACCCTGAAAGAAGGTTCTGGAAAAACGGGTCCCGTCGTGTACTGGATGTTCAGAGATCAACGGTTGAAAGATAATTGGGCTCTCATTCACGCCGTTCATCAAGCTAACAAAGCCAAAGTTCCTGTTGCCGTTGTTTTCAATCTTTTTGATCATTTTCTCGGTGCAAAGGCGCGTCATTTAGGGTTTATGCTTAAGGGTTTGCGTCAATTGTGTCACCAACTGCAACATTCTCTTCATATACCCTTTTTCTTAGTTCGGGGTGAGGCGGAGGAAACTGTATCGAAATTTGTTAGAGAATGTGGAGCTTCACTTTTGGTGACAGATATGTCACCTTTAAGAGAAGTGAAGAAATGCAAAGCTGAGATTTGTGAGAGAGTAAGTGATTTGGTTACTGTTCATGAAGTTGATGCTCACAACGTTGTGCCTCTTTGGGTTGCTTCTGAGAAGTTGGAGTATAGTGCTAGAACAATAAGGGGAAAGATAAACAAAAAGCTTTCTGATTATCTTGTTGATTTTCCTGATGTCGAACCACCAAATACAAAATGGGTCATCACTGAGGATCATGTCATAGACTGGGATGATATCATTGCTCAAGTTTTAAGGAGTGGATCTGAGGTTCCTGAAGTGGATTGGTGCGAGCCTGGAGAAATTGCTGCAATGGAAGTATTGATGGGAAGTAAAAATGGATTCTTGACTAAAAGGTTGAGAAATTATTCTACAGATCGCAACAACCCTTGTAAACCAACTGCACTTTCTGGTTTATCTCCCTATTTGCATTTTGGACAGATATCTGCTCAAAGATGTGCTTTAGAAGCTCGTAAGCTACGAGCTTCATATCCTCAGGCTGTTGACACTTTCTTGGAGGAGTTGATTGTGCGGAGAGAACTTGCTGATAACTTTTGCTACTATCAGCCTCATTATGATTCAATACAAGGAGCATGGGAGTGGGCTCGTAAAACCTTACTCGACCACGCCTCTGATAAGCGACAACATGTTTATACAAGAGAGCAATTGGAGAAGGCAAAAACTGCTGATCCTCTTTGGAATGCTTCTCAATTGGAGATGGTTCACTATGGGAAAATGCACGGTTTTATGCGAATGTATTGGGCGAAGAAGATACTTGAATGGACAAGAGGACCTGAAGAAGCACTTGAGATATGTATATATTTAAATGATAAGTATGAAATGGATGGGAGGGATCCAAGTGGTTATAATGGCTGCATGTGGTCTATATGTGGGGTACATGATCAGGGGTGGCGAGAGCGTCCCATTTTTGGGAAAATTCGATACATGAATTACGAAGGGTGCAAAAGAAAATTTGATGTTGACAGATACATTGCATATGTTAATAAAATAGTTGGTGAGCTCAGAAAGAGAAAAGCGGAAAATTTGCTGTCTGAAAAGGAGAAAGTACGCCGCTGTTGTAATCCTGAGGACTGA 1500 0.42 MATTPSPPSMLPSVNSGRIRTLKEGSGKTGPVVYWMFRDQRLKDNWALIHAVHQANKAKVPVAVVFNLFDHFLGAKARHLGFMLKGLRQLCHQLQHSLHIPFFLVRGEAEETVSKFVRECGASLLVTDMSPLREVKKCKAEICERVSDLVTVHEVDAHNVVPLWVASEKLEYSARTIRGKINKKLSDYLVDFPDVEPPNTKWVITEDHVIDWDDIIAQVLRSGSEVPEVDWCEPGEIAAMEVLMGSKNGFLTKRLRNYSTDRNNPCKPTALSGLSPYLHFGQISAQRCALEARKLRASYPQAVDTFLEELIVRRELADNFCYYQPHYDSIQGAWEWARKTLLDHASDKRQHVYTREQLEKAKTADPLWNASQLEMVHYGKMHGFMRMYWAKKILEWTRGPEEALEICIYLNDKYEMDGRDPSGYNGCMWSICGVHDQGWRERPIFGKIRYMNYEGCKRKFDVDRYIAYVNKIVGELRKRKAENLLSEKEKVRRCCNPED* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0375 499 Gene3D HUPs 12 157 IPR014729 -
Mtr5g0375 499 ProSitePatterns DNA photolyases class 2 signature 1. 306 320 IPR032673 -
Mtr5g0375 499 TIGRFAM phr2: deoxyribodipyrimidine photolyase 14 468 IPR008148 GO:0003904|GO:0006281
Mtr5g0375 499 Gene3D - 158 329 - -
Mtr5g0375 499 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 13 491 - -
Mtr5g0375 499 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 31 204 IPR036155 -
Mtr5g0375 499 MobiDBLite consensus disorder prediction 1 24 - -
Mtr5g0375 499 ProSitePatterns DNA photolyases class 2 signature 2. 433 452 IPR032673 -
Mtr5g0375 499 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 30 163 IPR006050 -
Mtr5g0375 499 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 330 480 - -
Mtr5g0375 499 Pfam DNA photolyase 32 193 IPR006050 -
Mtr5g0375 499 MobiDBLite consensus disorder prediction 1 22 - -
Mtr5g0375 499 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 222 478 IPR036134 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0375 K01669 - gmx:100170749 858.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0375 5 3454274 3457871 Mtr5g0375 5 3454274 3457871 ECH