Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g0343 ATGGCTTCCAAATTAGCGTCGCCGATGACGGTTCAGGCAGGTCGGATTCGGACCCTGAAAAATGGTTCCTGTGGAGAAGCGGGTTCGGGTCCCGTTGTGTACTGGATGTTCAGAGATCAACGGGTGAGAGACAACTGGGCTCTGATCCACGCCGTTGCTGAGGCCAACAAAGCCAACGTTCCTGTTGCCGTTGTTTTCAATCTATTCCACAGCTTTCTCGGCGCCAAATCTCGTCACCTAGGGTTCATGCTCAGGGGCTTGCGCCAATTGTGCCACCGTATGCAAAATACTCTTCAAATTCCATTTTTCTTGTTCCAGGGCGAGGCGGAGGAGACCGTGCCAGCGTTTCTTAGAGAATGTGGAGCTTCACTTTTGGTAACGGATTTCTCACCATTGCGGGAAATTCGAAGGTGTAAAGAAGAGATTTGCGAGAGGGTAAGCGATTCGGTTACGGTGCATGAAGTGGACGCTCACAACGTTGTGCCACTTTGGGTTGCCTCTGATAAATTGGAGTACAGTGCTAAGACAATCAGGACAAAGATAAACAAAAGGCTTTCTGAGTATCTCATCGATTTCCCTGACGTTGAAGATAATCTACCAACTAGGATGTGGGTTCTTCCCGAGAACCATTCCATTGACTGGGATGGTCTCATTGCTGATGTGTTAAGGACAGGAGCTGAGGTTCCTGAAGTTGATTGGTGTGAGCCGGGGGAAATTGCGGCAAGGGATGTGTTGATGGGAAGTGAAAATGGATTCTTGACAAAAAGGTTGAAAGGTTACTCTCTAGATCGCAACAACCCGTGCAACCCCAATGCACTTTCTGGTTTATCTCCCTATTTGCATTTTGGACAGATATCGGCTCAGCGATGTGCTTTTGAAGCACGTAAGCGGCGAAATTCACATCCTCAAGCCATTGATGCTTTCTTGGAGGAGTTGATTGTGCGGAGAGAGCTTGCTGATAACTATTGCTTCTACGAGCCCCACTATGATTCAATAAAAGGAGCATGGGGTTGGGCTCGGAACACCTTAGCGGAACATGCCACTGATAAGCGTGAACATATTTACACGAGGGAACAATTGGAGAAGGCACAAACTTCTGATCCTCTCTGGAATGCTTCTCAGCTGGAGATGGTTCACAAGGGGAAAATGCACGGATTTATGCGAATGTATTGGGCAAAGAAGATACTTGAGTGGACACGAGGACCTGAAGAAGCCCTTGAGACATCTCTGTATTTAAATGACAAGTATGAATTAGATGGGCGAGATCCAAATGGTTACGTTGGCTGTATGTGGTCGATATGCGGGGTTCATGATCAGGGGTGGAAGGAGCGGCCCATTTTTGGGAAAATTCGTTACATGAACTATGCAGGCTGCAAAAGAAAATTTGATGTCGATAAATACATTGCATATGTCAATAAATTAGTTCGTGATCTTAAAAAGAGAAAGGCTGAAAACTTGCTATCTGAAAGGGAAAAAGTTCTTCGCAGTTGTGTTCCAGAAGATTGA 1506 0.4635 MASKLASPMTVQAGRIRTLKNGSCGEAGSGPVVYWMFRDQRVRDNWALIHAVAEANKANVPVAVVFNLFHSFLGAKSRHLGFMLRGLRQLCHRMQNTLQIPFFLFQGEAEETVPAFLRECGASLLVTDFSPLREIRRCKEEICERVSDSVTVHEVDAHNVVPLWVASDKLEYSAKTIRTKINKRLSEYLIDFPDVEDNLPTRMWVLPENHSIDWDGLIADVLRTGAEVPEVDWCEPGEIAARDVLMGSENGFLTKRLKGYSLDRNNPCNPNALSGLSPYLHFGQISAQRCAFEARKRRNSHPQAIDAFLEELIVRRELADNYCFYEPHYDSIKGAWGWARNTLAEHATDKREHIYTREQLEKAQTSDPLWNASQLEMVHKGKMHGFMRMYWAKKILEWTRGPEEALETSLYLNDKYELDGRDPNGYVGCMWSICGVHDQGWKERPIFGKIRYMNYAGCKRKFDVDKYIAYVNKLVRDLKKRKAENLLSEREKVLRSCVPED* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g0343 501 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 30 163 IPR006050 -
Vra11g0343 501 TIGRFAM phr2: deoxyribodipyrimidine photolyase 10 470 IPR008148 GO:0003904|GO:0006281
Vra11g0343 501 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 223 469 IPR036134 -
Vra11g0343 501 Pfam DNA photolyase 32 193 IPR006050 -
Vra11g0343 501 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 332 482 - -
Vra11g0343 501 Gene3D HUPs 9 157 IPR014729 -
Vra11g0343 501 ProSitePatterns DNA photolyases class 2 signature 2. 435 454 IPR032673 -
Vra11g0343 501 Gene3D - 158 331 - -
Vra11g0343 501 PANTHER DEOXYRIBODIPYRIMIDINE PHOTOLYASE 9 494 - -
Vra11g0343 501 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 31 211 IPR036155 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g0343 K01669 - gmx:100170749 936.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g0343 11 2467477 2470448 Vra11g0343 11 2467477 2470448 ECH