Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0749 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0750 . . . Aed2g0942 . Ahy12g2266 . Aip02g02546 . . Amo02g2706 . . . . . . Cca01g02052 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu4g2538 . . . . . . . Viun10g01500 . .
Pvu10g0751 . . Adu02g02174 Aed2g0940 Aev02g1984 Ahy12g2268 Ahy2g1957 Aip02g02547 . . Amo02g2705 Apr10g0872 Arst2g02809 . . . Car06g02750 Cca01g02053 . Dod07g1708 . . . Gma01g01390 Gso1g1150 Gso3g0258 Lal14g0834 . Lal19g0268 Lan12g0167 Lan1g0729 . Lapu10g01410 Lasa7g00678 . . . . Lja3g3428 Mal7g0869 Mepo2g00814 Mesa13g04553 . Mtr4g0771 . Phco1g01054 . Psa7g5414 Pste6g00148 . Rops4g01173 Seca4g11006 . Ssu4g2539 . Tpr4g1011 Trre7g00778 Tsu06g00725 . Vifa2g05059 . Viun10g01502 Vivi5g00982 .
Pvu10g0752 . . Adu02g02175 Aed2g0939 Aev02g1985 Ahy12g2270 Ahy2g1958 Aip02g02549 . . Amo02g2704 Apr10g0873 Arst2g02810 . . . Car06g02751 Cca01g02054 . Dod07g1709 . . . Gma01g01391 Gso1g1151 Gso3g0257 Lal14g0837 . . Lan12g0166 . . Lapu10g01411 Lasa7g00677 . . . . Lja3g3429 Mal7g0868 Mepo2g00808 . . Mtr4g0763 . Phco1g01053 . Psa7g5416 Pste6g00142 . Rops4g01174 Seca4g11008 . Ssu4g2540 . Tpr4g1009 Trre7g00774 Tsu06g00721 . Vifa2g05062 . Viun10g01503 Vivi5g00985 .
Pvu10g0753 . Accr6g01023 Adu02g02176 Aed2g0938 Aev02g1986 Ahy12g2271 Ahy2g1959 Aip02g02550 Alju05g1071 . Amo02g2702 Apr10g0874 . . Bisa06g1010 . Car06g02752 Cca01g02055 Dere11g0821 Dod07g1710 Enph10g1291 Glsi07g1258 . . . Gso3g0256 . . Lal19g0267 . Lan1g0730 . Lapu10g01412 Lasa7g00675 . . . . Lja3g3430 . Mepo2g00802 Mesa13g04582 Mibi04g1187 Mtr4g0759 . Phco1g01052 . Psa7g5417 Pste6g00138 . Rops4g01175 Seca4g11010 . Ssu4g2541 Sto1g1776 Tpr4g1007 Trre7g00772 Tsu06g00719 . Vifa2g05063 . Viun10g01505 Vivi5g00996 .
Pvu10g0754 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0755 Acco07g1180 Accr6g01016 Adu02g02177 Aed2g0937 Aev02g1987 Ahy12g2272 Ahy2g1962 Aip02g02551 Alju05g1084 . Amo02g2701 Apr10g0875 Arst2g02813 . Bisa06g1005 . Car06g02753 Cca01g02056 Dere11g0819 . Enph10g1293 Glsi07g1256 . Gma01g01393 . Gso3g0253 . . Lal19g0266 Lan12g0165 . . Lapu10g01413 Lasa7g00664 . Lele38g0711 . . Lja3g3431 . Mepo2g00801 Mesa13g04583 Mibi04g1184 Mtr4g0758 . Phco1g01050 . Psa7g5420 Pste6g00129 . Rops4g01179 Seca2g01192 . . Sto1g1773 Tpr4g1006 Trre7g00771 Tsu06g00717 . . . Viun10g01507 Vivi5g01005 .
Pvu10g0756 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01049 . . . . . . . . . . . . . . . . . .
Pvu10g0757 . . Adu02g02178 . . Ahy12g2276 Ahy2g1963 Aip02g02552 . Amo12g2616 Amo02g2700 Apr10g0876 Arst2g02814 . . . . . . Dod07g1712 . . . Gma01g01394 Gso1g1153 . Lal14g0840 . Lal19g0265 . Lan1g0731 . Lapu10g01415 . . . . . Lja3g3433 Mal7g0855 . . . . . Phco1g01048 . . Pste6g00110 . . . . Ssu4g2543 . . . . . . Vimu9g00711 . . .
Pvu10g0758 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0749 Chr10 19738289 19740223 +
Pvu Pvu10g0750 Chr10 19983641 19985927 -
Aed Aed2g0942 Chr2 7399545 7399969 +
Ahy Ahy12g2266 Chr12 109646949 109648350 +
Aip Aip02g02546 Chr02 99911555 99912748 +
Amo Amo02g2706 Chr02 83973450 83974610 -
Cca Cca01g02052 Chr01 47638187 47639245 -
Ssu Ssu4g2538 Chr4 63969229 63970381 -
Viun Viun10g01500 Chr10 29470798 29472931 +
Pvu Pvu10g0751 Chr10 20095904 20100486 +
Adu Adu02g02174 Chr02 85871208 85874120 +
Aed Aed2g0940 Chr2 7375766 7376803 -
Aev Aev02g1984 Chr02 21618974 21620008 +
Ahy Ahy12g2268 Chr12 109678595 109681538 +
Ahy Ahy2g1957 Chr2 93969742 93972668 +
Aip Aip02g02547 Chr02 99935568 99943890 +
Amo Amo02g2705 Chr02 83964882 83967787 -
Apr Apr10g0872 Chr10 21134442 21138760 +
Arst Arst2g02809 Chr2 85332742 85335566 +
Car Car06g02750 Chr06 37934474 37935505 +
Cca Cca01g02053 Chr01 47649007 47652621 +
Dod Dod07g1708 Chr07 45374139 45378309 +
Gma Gma01g01390 Chr01 48009362 48011650 +
Gso Gso1g1150 Chr1 46344349 46348486 +
Gso Gso3g0258 Chr3 3651416 3654902 -
Lal Lal14g0834 Chr14 10510086 10519231 +
Lal Lal19g0268 Chr19 2706402 2707433 -
Lan Lan12g0167 Chr12 2292883 2295847 -
Lan Lan1g0729 Chr1 17029664 17053282 +
Lapu Lapu10g01410 Chr10 21915271 21919820 +
Lasa Lasa7g00678 Chr7 38031126 38032157 -
Lja Lja3g3428 Chr3 67670494 67674659 +
Mal Mal7g0869 Chr7 23637208 23641089 -
Mepo Mepo2g00814 Chr2 10140765 10142178 -
Mesa Mesa13g04553 Chr13 72039135 72040169 +
Mtr Mtr4g0771 Chr4 9876776 9881487 -
Phco Phco1g01054 Chr1 12179543 12180571 -
Psa Psa7g5414 Chr7 466668445 466671182 +
Pste Pste6g00148 Chr6 466416 467444 -
Rops Rops4g01173 Chr4 31737557 31740517 +
Seca Seca4g11006 Chr4 247991657 247995259 +
Ssu Ssu4g2539 Chr4 64012920 64013948 +
Tpr Tpr4g1011 Chr4 9707173 9711031 -
Trre Trre7g00778 Chr7 5130925 5131953 -
Tsu Tsu06g00725 Chr06 6377731 6378759 -
Vifa Vifa2g05059 Chr2 1506931572 1506932603 +
Viun Viun10g01502 Chr10 29572026 29576399 +
Vivi Vivi5g00982 Chr5 23255145 23257853 +
Pvu Pvu10g0752 Chr10 20142149 20145976 +
Adu Adu02g02175 Chr02 85879923 85885337 +
Aed Aed2g0939 Chr2 7367205 7371746 -
Aev Aev02g1985 Chr02 21621621 21625094 +
Ahy Ahy12g2270 Chr12 109704097 109707876 +
Ahy Ahy2g1958 Chr2 93982876 93986585 +
Aip Aip02g02549 Chr02 99964047 99967818 +
Amo Amo02g2704 Chr02 83953940 83954481 -
Apr Apr10g0873 Chr10 21148132 21152369 +
Arst Arst2g02810 Chr2 85343578 85347119 +
Car Car06g02751 Chr06 37959834 37964111 +
Cca Cca01g02054 Chr01 47657839 47662077 +
Dod Dod07g1709 Chr07 45392238 45396382 +
Gma Gma01g01391 Chr01 48024235 48029027 +
Gso Gso1g1151 Chr1 46361454 46365858 +
Gso Gso3g0257 Chr3 3640904 3645215 -
Lal Lal14g0837 Chr14 10546127 10549808 +
Lan Lan12g0166 Chr12 2277648 2280792 -
Lapu Lapu10g01411 Chr10 21925415 21929344 +
Lasa Lasa7g00677 Chr7 37630022 37632657 -
Lja Lja3g3429 Chr3 67679772 67683749 +
Mal Mal7g0868 Chr7 23627563 23634427 -
Mepo Mepo2g00808 Chr2 9912213 9915128 +
Mtr Mtr4g0763 Chr4 9663120 9684030 -
Phco Phco1g01053 Chr1 12138927 12147574 -
Psa Psa7g5416 Chr7 466949777 466960486 +
Pste Pste6g00142 Chr6 443773 448383 -
Rops Rops4g01174 Chr4 31766296 31770106 +
Seca Seca4g11008 Chr4 248001638 248003198 +
Ssu Ssu4g2540 Chr4 64045910 64049716 +
Tpr Tpr4g1009 Chr4 9691566 9693442 -
Trre Trre7g00774 Chr7 5099476 5105426 -
Tsu Tsu06g00721 Chr06 6280422 6290896 -
Vifa Vifa2g05062 Chr2 1507614463 1507618592 +
Viun Viun10g01503 Chr10 29585021 29588650 +
Vivi Vivi5g00985 Chr5 23351722 23353329 +
Pvu Pvu10g0753 Chr10 20228869 20233664 -
Accr Accr6g01023 Chr6 28005626 28009748 +
Adu Adu02g02176 Chr02 85885917 85888089 -
Aed Aed2g0938 Chr2 7362341 7364386 +
Aev Aev02g1986 Chr02 21628578 21630754 -
Ahy Ahy12g2271 Chr12 109707986 109710455 -
Ahy Ahy2g1959 Chr2 93986395 93989146 -
Aip Aip02g02550 Chr02 99968106 99970362 -
Alju Alju05g1071 Chr05 27182544 27192183 -
Amo Amo02g2702 Chr02 83948286 83950812 +
Apr Apr10g0874 Chr10 21156396 21159923 -
Bisa Bisa06g1010 Chr06 34799182 34813621 +
Car Car06g02752 Chr06 38020110 38024133 -
Cca Cca01g02055 Chr01 47683561 47687024 -
Dere Dere11g0821 Chr11 15436082 15443777 +
Dod Dod07g1710 Chr07 45402046 45404225 -
Enph Enph10g1291 Chr10 19780460 19786013 -
Glsi Glsi07g1258 Chr07 20025722 20032261 +
Gso Gso3g0256 Chr3 3636064 3640000 +
Lal Lal19g0267 Chr19 2696451 2700100 +
Lan Lan1g0730 Chr1 17038513 17041390 -
Lapu Lapu10g01412 Chr10 21961426 21965566 -
Lasa Lasa7g00675 Chr7 37253304 37255946 -
Lja Lja3g3430 Chr3 67684434 67687597 -
Mepo Mepo2g00802 Chr2 9842707 9848425 +
Mesa Mesa13g04582 Chr13 72506515 72510700 -
Mibi Mibi04g1187 Chr04 27581270 27585844 +
Mtr Mtr4g0759 Chr4 9634632 9639523 +
Phco Phco1g01052 Chr1 12123705 12127102 +
Psa Psa7g5417 Chr7 466955685 466963274 -
Pste Pste6g00138 Chr6 429203 432767 +
Rops Rops4g01175 Chr4 31771124 31774652 -
Seca Seca4g11010 Chr4 248027528 248031320 -
Ssu Ssu4g2541 Chr4 64065996 64067712 -
Sto Sto1g1776 Chr1 25971207 25974924 +
Tpr Tpr4g1007 Chr4 9677178 9681019 +
Trre Trre7g00772 Chr7 5096047 5098901 +
Tsu Tsu06g00719 Chr06 6273606 6276723 +
Vifa Vifa2g05063 Chr2 1507619994 1507622558 -
Viun Viun10g01505 Chr10 29603965 29608490 -
Vivi Vivi5g00996 Chr5 23713091 23716114 -
Pvu Pvu10g0754 Chr10 20355445 20358643 -
Pvu Pvu10g0755 Chr10 20939461 20942539 -
Acco Acco07g1180 Chr07 19272388 19274583 -
Accr Accr6g01016 Chr6 27222166 27224373 +
Adu Adu02g02177 Chr02 85988944 85992064 +
Aed Aed2g0937 Chr2 7341925 7344195 +
Aev Aev02g1987 Chr02 21649214 21651517 -
Ahy Ahy12g2272 Chr12 109784890 109788029 +
Ahy Ahy2g1962 Chr2 94080450 94083572 +
Aip Aip02g02551 Chr02 100042723 100045816 +
Alju Alju05g1084 Chr05 28471356 28473557 +
Amo Amo02g2701 Chr02 83853927 83857180 -
Apr Apr10g0875 Chr10 21191847 21195083 -
Arst Arst2g02813 Chr2 85450480 85453623 +
Bisa Bisa06g1005 Chr06 34508762 34510933 +
Car Car06g02753 Chr06 38041067 38044122 -
Cca Cca01g02056 Chr01 47728111 47731324 -
Dere Dere11g0819 Chr11 15356961 15359180 +
Enph Enph10g1293 Chr10 20024510 20026746 -
Glsi Glsi07g1256 Chr07 19947546 19949378 +
Gma Gma01g01393 Chr01 48148336 48149500 -
Gso Gso3g0253 Chr3 3588777 3591836 -
Lal Lal19g0266 Chr19 2665116 2667203 +
Lan Lan12g0165 Chr12 2258168 2261159 +
Lapu Lapu10g01413 Chr10 21998072 22001241 -
Lasa Lasa7g00664 Chr7 35942672 35944897 +
Lele Lele38g0711 Chr38 17890662 17892890 -
Lja Lja3g3431 Chr3 67709749 67712887 -
Mepo Mepo2g00801 Chr2 9827916 9830184 +
Mesa Mesa13g04583 Chr13 72521246 72523129 -
Mibi Mibi04g1184 Chr04 27434733 27437000 +
Mtr Mtr4g0758 Chr4 9626283 9629123 +
Phco Phco1g01050 Chr1 12037054 12039565 +
Psa Psa7g5420 Chr7 467213355 467215326 -
Pste Pste6g00129 Chr6 398095 400212 +
Rops Rops4g01179 Chr4 31973524 31976363 -
Seca Seca2g01192 Chr2 19281115 19284144 -
Sto Sto1g1773 Chr1 25924528 25926693 +
Tpr Tpr4g1006 Chr4 9659638 9662812 +
Trre Trre7g00771 Chr7 5081013 5083229 +
Tsu Tsu06g00717 Chr06 6252152 6255283 +
Viun Viun10g01507 Chr10 29642846 29646054 -
Vivi Vivi5g01005 Chr5 24066225 24069465 -
Pvu Pvu10g0756 Chr10 21011232 21015209 -
Phco Phco1g01049 Chr1 12006805 12011642 +
Pvu Pvu10g0757 Chr10 21305619 21309475 -
Adu Adu02g02178 Chr02 86023117 86025807 -
Ahy Ahy12g2276 Chr12 109826068 109829167 -
Ahy Ahy2g1963 Chr2 94114425 94117527 -
Aip Aip02g02552 Chr02 100079612 100081810 -
Amo Amo12g2616 Chr12 110564921 110567993 -
Amo Amo02g2700 Chr02 83820132 83823208 +
Apr Apr10g0876 Chr10 21237445 21242026 -
Arst Arst2g02814 Chr2 85484438 85487355 -
Dod Dod07g1712 Chr07 45452502 45456005 -
Gma Gma01g01394 Chr01 48230696 48232906 -
Gso Gso1g1153 Chr1 46563393 46566564 -
Lal Lal14g0840 Chr14 10574355 10577380 -
Lal Lal19g0265 Chr19 2657859 2660873 +
Lan Lan1g0731 Chr1 17140333 17143423 +
Lapu Lapu10g01415 Chr10 22121837 22124969 -
Lja Lja3g3433 Chr3 67764684 67767612 -
Mal Mal7g0855 Chr7 23293300 23295450 +
Phco Phco1g01048 Chr1 11956736 11958910 +
Pste Pste6g00110 Chr6 341786 343951 +
Ssu Ssu4g2543 Chr4 64405212 64407359 -
Vimu Vimu9g00711 Chr9 10559657 10565381 -
Pvu Pvu10g0758 Chr10 21426471 21429426 -