Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02054 ATGAGTTCCGGCGAGCTCCTCCACATACAGCCCCAGGAGCTGCAGTTTCCCTTTGAATTGAGGAAGCAGATCTCATGCTCTTTGCAGTTGTCTAACAAGACTGATAACTATGTGGCTTTCAAGGTTAAGACAACAAATCCTAAGAAATATTGTGTCAGACCTAACACTGGAGTGGTGATGCCTAGGTCTTCATGTGATATTATAGTAACAATGCAAGCTCAAAAAGAGGCACCACCTGACATGCAATGCAAGGATAAGTTTCTCCTTCAAAGTGTGGTTGCAAGCCCTGGGGCAACTACAAAAGATATCACTCCAGAAATGTTCAATAAAGAATCTGGTCATGAAGTTGAAGAGTGCAAGTTAAGAGTTGTTTATGTTGCTCCTCCTCAACCACCGTCCCCAGTTCGAGAAGGATCTGATGAGGATTCATCACCTCGAGCGTCCGTATCTGAAAATGGACATTCAAGAGCTTTGGAGTTTGCAGGGGCTTCAAAAGCTTTCAATGAGCGAGGTGAACACCAGGATACTTCATTTGAGACAAGAGCTATTCTTTCAAAGGCAACTGAGGAGAGGAATTCTGTAATTGAGCAAAATAAAAGACTTCAGCAAGAACTGGAGGTTTTGAGGCGCGAAGCCGGCAGAAGCCGCGGCGGTGTACCATTCATGTATGTAGTTCTTGTTGGCATCATTGGCATCATTTTAGGTTTCCTATTGAAGAGGACGTGA 726 0.4421 MSSGELLHIQPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVMPRSSCDIIVTMQAQKEAPPDMQCKDKFLLQSVVASPGATTKDITPEMFNKESGHEVEECKLRVVYVAPPQPPSPVREGSDEDSSPRASVSENGHSRALEFAGASKAFNERGEHQDTSFETRAILSKATEERNSVIEQNKRLQQELEVLRREAGRSRGGVPFMYVVLVGIIGIILGFLLKRT 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02054 241 Pfam MSP (Major sperm protein) domain 7 110 IPR000535 -
Cca01g02054 241 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-LIKE 1 239 - -
Cca01g02054 241 PIRSF VAMP_assoc_prot 1 240 IPR016763 GO:0005789
Cca01g02054 241 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 1 239 IPR016763 GO:0005789
Cca01g02054 241 Coils Coil 184 211 - -
Cca01g02054 241 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Cca01g02054 241 MobiDBLite consensus disorder prediction 127 154 - -
Cca01g02054 241 Gene3D Immunoglobulins 2 130 IPR013783 -
Cca01g02054 241 SUPERFAMILY PapD-like 2 140 IPR008962 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02054 Cca-Chr1 47657839 47662077 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02054 - - gmx:100305725 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02054 01 47657839 47662077 Cca01g02054 01 47657839 47662077 ECH