Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr4g1009 ATGGGACAAAGAGTTTCTTGTTGCACTCACCCATCTTTTGCTTCTTCCAATTATGGTGATTATGAAAAATTGGAATCAGAAGAAGATAGCATTGTTCAAAAGAAAAACAAATCACAAGAAGATTCTTATCCGGAGCTGCACTTTCCATTTGAATTGGGGAAGAGGATCAAACAGTCTTTTCCATTGACTAACCCAACAGATGATTATATGGCTTTTCGTGTTATGGGTTCAAATCCAAAGAAGTACTCTGTTAGTTCTAATATTGGAGCTGTGTCGCCTAAGTCTACTTATGATATTAAAGTTACAATGCAAGCTCAAGAGGAGGCACCTCCAAACATGCAATGCAAAGATATCTTTGTATTTAAAACAATATTTGTAAAGCCCGGAGCTACTAGAAAACATATCACTCCAGAAATGTTTGAAAAAAATTCCGGCTATGAGGTGAAAGAATTGATCGTGCGAGTTGTTTATGTTGCTCCTCCTAAACTGCCATCCCCATTTCAAGAAACATTCGATAGAAAATCGTCTCCTCGAGCAAATTAA 543 0.3702 MGQRVSCCTHPSFASSNYGDYEKLESEEDSIVQKKNKSQEDSYPELHFPFELGKRIKQSFPLTNPTDDYMAFRVMGSNPKKYSVSSNIGAVSPKSTYDIKVTMQAQEEAPPNMQCKDIFVFKTIFVKPGATRKHITPEMFEKNSGYEVKELIVRVVYVAPPKLPSPFQETFDRKSSPRAN* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr4g1009 180 SUPERFAMILY PapD-like 44 168 IPR008962 -
Tpr4g1009 180 Coils Coil 21 41 - -
Tpr4g1009 180 Pfam MSP (Major sperm protein) domain 45 142 IPR000535 -
Tpr4g1009 180 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-RELATED 45 179 - -
Tpr4g1009 180 Gene3D Immunoglobulins 33 162 IPR013783 -
Tpr4g1009 180 ProSiteProfiles Major sperm protein (MSP) domain profile. 36 158 IPR000535 -
Tpr4g1009 180 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 45 179 IPR016763 GO:0005789
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr4g1009 Tpr-Chr4 9691566 9693442 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr4g1009 - - gmx:100779655 166.007