Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2540 ATGAGTTCCGGCGAGCTCCTCCACATACAGCCCCAGGAGCTGCAGTTTCCCTTTGAATTGAGGAAGCAGATCTCGTGCTCTTTGCAGTTGTCTAACAAGACAGATAACTATGTGGCTTTCAAGGTTAAGACAACAAATCCTAAGAAATATTGTGTTAGACCTAACACTGGAGTTGTGATGCCTAGGTCTACATGTGATATTACagtaACAATGCAAGCTCAAAAAGAGGCACCCCCTGACATGCAATGCAAGGATAAGTTTCTCCTTCAAAGTGTAGTTGCAAGCCCTGGGGCAACCACAAAAGATATCACTCCAGAAATGTTCAATAAAGAATCTGGTCATGATGTTGAAGAGTGCAAATTGAGAGTTGTTTATGTTGCTCCTCCTCGACCACCATCCCCGGTTCGGGAAGGATCTGATGAAGACTCGTCACCTCGTGCATCTGTATCTGAAAATGGACACTCAAGTGCTTTGGAATTTACAGGGGCTTCGAAAGCTTTCAATGAGCGGGGTGAACATCAGGATACTTCATTTGAGGCAAGAGGTCCTATTTCAAAGGCAACTGAGGAGAGGAATTCTGTTATTGAGCAAAACAAAAGACTTCAGCAAGAACTGGAGTTTTTGAGGCGCGAAGCCAACAGAAGCCGTGGCGGTGTACCAGTCATGTACGTACTTCTTGTTGGCATCATTGGCATCATTTTGGGTTTCCTATTGAAGAGGACGTGA 726 0.4463 MSSGELLHIQPQELQFPFELRKQISCSLQLSNKTDNYVAFKVKTTNPKKYCVRPNTGVVMPRSTCDITVTMQAQKEAPPDMQCKDKFLLQSVVASPGATTKDITPEMFNKESGHDVEECKLRVVYVAPPRPPSPVREGSDEDSSPRASVSENGHSSALEFTGASKAFNERGEHQDTSFEARGPISKATEERNSVIEQNKRLQQELEFLRREANRSRGGVPVMYVLLVGIIGIILGFLLKRT 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2540 241 Gene3D Immunoglobulins 2 130 IPR013783 -
Ssu4g2540 241 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 1 239 IPR016763 GO:0005789
Ssu4g2540 241 Coils Coil 184 218 - -
Ssu4g2540 241 PIRSF VAMP_assoc_prot 1 240 IPR016763 GO:0005789
Ssu4g2540 241 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-LIKE 1 239 - -
Ssu4g2540 241 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Ssu4g2540 241 MobiDBLite consensus disorder prediction 127 155 - -
Ssu4g2540 241 SUPERFAMILY PapD-like 2 140 IPR008962 -
Ssu4g2540 241 Pfam MSP (Major sperm protein) domain 7 110 IPR000535 -
Ssu4g2540 241 MobiDBLite consensus disorder prediction 169 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g2540 Ssu-Chr4 64045910 64049716 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2540 - - gmx:100305725 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g2540 4 64045910 64049716 Ssu4g2540 4 64045910 64049716 ECH