Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa7g5416 ATGGGACAAACGGTTTCTTATGCTTCATCCTCAGCTTCTAAATTGTTGCGGTTTGTTATTCCACATCGTTATGTTTCTCCATTGGATTGGGGTTATGAAAAATTGAATAATCAAGATGATAGTTTCCATCTCCAGATTCATCCTCAAGAGCTGCAATTTCCATTTGAGTTGAAGAAGCAGATATCTTGCTCCTTGCAGTTGTCTAACAAGTCAGATAATTGTGTAGCTTTCAAGGTTAAGACTACAAATCAAAAGAATTATTGTGTTAAGCCTAACAGTGGAGTTGTGTTGCCCAAATCAACTTTTCATATTAGAGTTATAATGCAAGCCCAAAATGAGGCACCTCCTGACATGCAATGCCTGGATAAGTTTCTTTTTCAAAGCATAGTTGCAAAACACAAAACATATCACTCCAAAAATGGAGCCACCACAAAAGATATCACTCCAAAAATGTTCGATAAAGAATCTGGCTATAAGGTTAAAGAGTGCAAATTGAGGGTTGTCTATGTTGCTCCTCCTCAACCACGATCTTCAATTCAAGAAGGATTTGATAAAGATTCGAAAGTTTCATATGAACATGATGAACAACTTGATACTTTATTTGAGGTACATCCTCAAGAGCTGCAATTTCCTTTTGAATTGAGGAAGCAAATATCATGCTCCTTGCAGTTTTCTAACAAGTCAGATAATTACGTGGCTTTTAAGGTTAAGACTACAAATCAGAAGAGGTATTGTGTTAGGCCTAATCATGGAGTTGTGTTGCCTAGGTCTACTTGTGATGTCATAGTTACCATGCAAGCTCAAATGGAAACACCTCCTGACATGCAATGCAAAGATAAATTTCTTATTCAAAACGTAGTTACAAAGATGGGAGCAACCAAAAAAGATATCACTTCAGAAATGTTTAATAAAAAGTCGGGCTCTAAAGTTAAAGAGTGCAAACTAAAAGTTATTTATGTTGAACCTTCTCAACCATCATCCACAATTCAAGGAGGATCTGACGAATATTTTTCTCCTCGCTCATCTGTCTTTTCAGATCAGGCAAATGCGGTTATTTTGAAATTAACTGAGGAGAGGGATAATGCTATTGAGCAAAATAAAAGGCTTGAGCAAGAATTGGAGCTTTTGAGAAGTGAGGCCAGCAAAGACTATCATATAAAATAG 1164 0.3651 MGQTVSYASSSASKLLRFVIPHRYVSPLDWGYEKLNNQDDSFHLQIHPQELQFPFELKKQISCSLQLSNKSDNCVAFKVKTTNQKNYCVKPNSGVVLPKSTFHIRVIMQAQNEAPPDMQCLDKFLFQSIVAKHKTYHSKNGATTKDITPKMFDKESGYKVKECKLRVVYVAPPQPRSSIQEGFDKDSKVSYEHDEQLDTLFEVHPQELQFPFELRKQISCSLQFSNKSDNYVAFKVKTTNQKRYCVRPNHGVVLPRSTCDVIVTMQAQMETPPDMQCKDKFLIQNVVTKMGATKKDITSEMFNKKSGSKVKECKLKVIYVEPSQPSSTIQGGSDEYFSPRSSVFSDQANAVILKLTEERDNAIEQNKRLEQELELLRSEASKDYHIK* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa7g5416 387 ProSiteProfiles Major sperm protein (MSP) domain profile. 43 170 IPR000535 -
Psa7g5416 387 Coils Coil 345 379 - -
Psa7g5416 387 Gene3D Immunoglobulins 194 324 IPR013783 -
Psa7g5416 387 Gene3D Immunoglobulins 36 174 IPR013783 -
Psa7g5416 387 SUPERFAMILY PapD-like 39 181 IPR008962 -
Psa7g5416 387 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 43 189 IPR016763 GO:0005789
Psa7g5416 387 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 198 380 IPR016763 GO:0005789
Psa7g5416 387 SUPERFAMILY PapD-like 198 334 IPR008962 -
Psa7g5416 387 Pfam MSP (Major sperm protein) domain 202 305 IPR000535 -
Psa7g5416 387 Pfam MSP (Major sperm protein) domain 44 136 IPR000535 -
Psa7g5416 387 ProSiteProfiles Major sperm protein (MSP) domain profile. 200 320 IPR000535 -
Psa7g5416 387 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-RELATED 43 189 - -
Psa7g5416 387 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-RELATED 198 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa7g5416 Psa-Chr7 466949777 466960486 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa7g5416 - - ath:AT1G51270 304.293