Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05062 ATGGGACAAACGGTTTCTTCTGCTTCATCCTCAGCTTCTAAATTATTGCGTTTGGTCATTCCACGACGTTATGCTTCTCCATTGAATTTGGGTTATGAAAAATTGAATGATCAAGATGATAATCTCCATCTCCAGATTCATCCTCAAGAGCTGCAATTTCCATTTGAGTTGAAGAAGCAGATATCTTGCCACTTGCAGTTGTCTAACAAATCAAATAATTGCGTGGCTTTCAAGGCTAAGACTACAAATCAAAAGAATTATTGTGTTAAGCCTAACATTGGAGTTGTGTTGCCAAAGTCAACTATTAATGTTAGAGTTACAATGCAAGCCCAAAAGGAGGCACCTCTTGACATGCAATGTCGAGATAAGTTTCTTTTTCAAAGCATAGTTGCAAAACACAAAACATATCACTCCAAAAATGAAGCCACCACAAAAGATATCACTCCAAAAATGTTTGATAAAGATTCCGGCTACGTGGTTAAGGAGTGCAAATTGAGGGTTGTCTATGTTGATCCTCCTCGACCGCAGACTCCCATTCGAGATGGATCTGATAACGATTCGAAAGTTTCAAATAAACATGTTAAACAACTTGATACTTCATTTGAGGTACATCCTCAAGAGCTGCAATTTTCTTTTGAATTGAGGAAGCAGATATCATCCTCTTTGGAGTTGTCTAACAAGTCAGATAATTACGTGGCTTTCAAGGTTAAGACTACAAATCCGAAGAAGTATTTTGTTAAGCCTAATCATGGAGTTATGTTGCCTAGGTCTACTTGTGATGTTAAAGTTACCATGGAAGCTCAAAAGGAAACACCTCCTGACATGCAATGTAAAGATAAGTTTCTTATTCAAGGCGTAGTTGCAAAGATAGGAGCAACCACAAAAGATATCACTTCAGAAATGTTTAATAAAAAGTTGGGCTCTAAAGTTAAAGAGTGCAAACTAAGAGTTATTTATGCTGAACCTTCTCAACCATCATCTCCAATTCAAGAGGGATTTGATGGATATTTGTCTCCTCGTTCATGTGTCTTTTCAGATCAGGCAAATGCACTTATTTCAAAATTAACTGAGGAGAGGGATAATGCTATTGAGCAAAATAAAAGACTTGAGCAAGAATTGGAGCTTTTGAAGAGTAAGACCAACAATAACTAA 1152 0.3698 MGQTVSSASSSASKLLRLVIPRRYASPLNLGYEKLNDQDDNLHLQIHPQELQFPFELKKQISCHLQLSNKSNNCVAFKAKTTNQKNYCVKPNIGVVLPKSTINVRVTMQAQKEAPLDMQCRDKFLFQSIVAKHKTYHSKNEATTKDITPKMFDKDSGYVVKECKLRVVYVDPPRPQTPIRDGSDNDSKVSNKHVKQLDTSFEVHPQELQFSFELRKQISSSLELSNKSDNYVAFKVKTTNPKKYFVKPNHGVMLPRSTCDVKVTMEAQKETPPDMQCKDKFLIQGVVAKIGATTKDITSEMFNKKLGSKVKECKLRVIYAEPSQPSSPIQEGFDGYLSPRSCVFSDQANALISKLTEERDNAIEQNKRLEQELELLKSKTNNN 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05062 383 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 201 379 IPR016763 GO:0005789
Vifa2g05062 383 FunFam Vesicle-associated protein 1-1 196 323 - -
Vifa2g05062 383 SUPERFAMILY PapD-like 39 185 IPR008962 -
Vifa2g05062 383 SUPERFAMILY PapD-like 200 331 IPR008962 -
Vifa2g05062 383 Gene3D Immunoglobulins 36 174 IPR013783 -
Vifa2g05062 383 Gene3D Immunoglobulins 195 324 IPR013783 -
Vifa2g05062 383 Pfam MSP (Major sperm protein) domain 202 303 IPR000535 -
Vifa2g05062 383 Pfam MSP (Major sperm protein) domain 44 141 IPR000535 -
Vifa2g05062 383 Coils Coil 345 379 - -
Vifa2g05062 383 FunFam Vesicle-associated protein 1-1 38 173 - -
Vifa2g05062 383 ProSiteProfiles Major sperm protein (MSP) domain profile. 200 320 IPR000535 -
Vifa2g05062 383 ProSiteProfiles Major sperm protein (MSP) domain profile. 43 170 IPR000535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05062 Vifa-Chr2 1507614463 1507618592 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05062 - - tpra:123924150 478.789