Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0759 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0760 . . Adu02g01994 . . Ahy12g2069 Ahy2g1804 Aip02g02310 . Amo12g2327 . . Arst2g02608 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01374 . . Pste6g00698 . . . . . . . . . . . Vimu9g00988 . . .
Pvu10g0761 . . . . . . . . . . . . . . . . Car06g02558 . . . . . . . . . . . . . . . . . . . . . . Mal7g0433 Mepo2g00506 . . Mtr4g0476 . Phco1g01371 . . Pste6g00715 . . . Spst4g00950 . . Tpr4g0776 Trre7g00492 Tsu06g00472 . . Vimu9g00991 . Vivi5g00705 .
Pvu10g0762 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g01367 . . . . . . . . . . . . . . Vimu9g00996 . . .
Pvu10g0763 . . . . . . . . . . . . . . . . Car06g02550 . . . . . . . . . . . . . . . . . . . . . . Mal7g0432 Mepo2g00505 Mesa13g05002 . Mtr4g0474 . Phco1g01361 . . . . . . . . . Tpr4g0774 . Tsu06g00469 . . Vimu9g00999 . Vivi5g00706 .
Pvu10g0764 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu9g01002 . Vivi5g00732 .
Pvu10g0765 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0766 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0767 . . . . . . . . . . . . . . . . . . . . . . Gma03g00700 . Gso1g0945 . . . . . . . . . . . . . . . . . . . . . . . Pste6g00006 . . . . . . . . . . . . . Vivi5g00775 .
Pvu10g0768 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0759 Chr10 21430642 21434579 -
Pvu Pvu10g0760 Chr10 21754392 21760365 -
Adu Adu02g01994 Chr02 82600823 82605112 -
Ahy Ahy12g2069 Chr12 105114460 105119115 -
Ahy Ahy2g1804 Chr2 90807960 90814008 -
Aip Aip02g02310 Chr02 95651791 95656288 -
Amo Amo12g2327 Chr12 104556074 104560689 -
Arst Arst2g02608 Chr2 82050069 82054185 -
Phco Phco1g01374 Chr1 39726596 39733664 +
Pste Pste6g00698 Chr6 2642078 2646970 +
Vimu Vimu9g00988 Chr9 16578752 16583169 -
Pvu Pvu10g0761 Chr10 21918263 21923032 -
Car Car06g02558 Chr06 30419517 30420623 -
Mal Mal7g0433 Chr7 11484397 11487342 -
Mepo Mepo2g00506 Chr2 6033827 6037024 +
Mtr Mtr4g0476 Chr4 5839486 5842659 -
Phco Phco1g01371 Chr1 39184748 39187498 +
Pste Pste6g00715 Chr6 2714290 2716868 +
Spst Spst4g00950 Chr4 39659919 39662288 +
Tpr Tpr4g0776 Chr4 7279363 7282985 -
Trre Trre7g00492 Chr7 3079534 3082164 -
Tsu Tsu06g00472 Chr06 4040576 4044616 -
Vimu Vimu9g00991 Chr9 16622027 16625955 +
Vivi Vivi5g00705 Chr5 13397829 13400866 +
Pvu Pvu10g0762 Chr10 22153698 22154300 +
Phco Phco1g01367 Chr1 38753839 38754330 -
Vimu Vimu9g00996 Chr9 16720419 16721147 +
Pvu Pvu10g0763 Chr10 22290062 22291860 +
Car Car06g02550 Chr06 30102289 30103389 +
Mal Mal7g0432 Chr7 11481785 11482863 +
Mepo Mepo2g00505 Chr2 5971507 5972410 +
Mesa Mesa13g05002 Chr13 79965735 79966933 -
Mtr Mtr4g0474 Chr4 5831359 5832396 +
Phco Phco1g01361 Chr1 38367896 38369296 -
Tpr Tpr4g0774 Chr4 7271485 7273120 +
Tsu Tsu06g00469 Chr06 4032175 4033356 +
Vimu Vimu9g00999 Chr9 16748809 16749474 +
Vivi Vivi5g00706 Chr5 13445767 13446611 -
Pvu Pvu10g0764 Chr10 22400697 22408351 +
Vimu Vimu9g01002 Chr9 16836148 16842196 +
Vivi Vivi5g00732 Chr5 14154534 14158215 +
Pvu Pvu10g0765 Chr10 22640485 22647635 -
Pvu Pvu10g0766 Chr10 22750279 22750447 +
Pvu Pvu10g0767 Chr10 22751813 22754469 +
Gma Gma03g00700 Chr03 22240922 22245334 +
Gso Gso1g0945 Chr1 38210987 38215239 +
Pste Pste6g00006 Chr6 16419 39400 +
Vivi Vivi5g00775 Chr5 14635491 14638887 -
Pvu Pvu10g0768 Chr10 22788674 22788904 -