Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g1221 . . Adu06g01871 . Aev06g1458 Ahy16g2005 Ahy6g1725 Aip06g02181 . Amo16g2602 . Apr4g1342 Arst6g02426 . . . Car03g01987 Cca07g00514 . . . . . . . . Lal8g0929 . . . . . Lapu1g00299 Lasa3g02559 . . . . Lja1g1446 . . . . . . . . . Pste5g01414 Pumo5g02466 Rops8g02649 Seca2g03766 Spst1g03543 Ssu4g1626 . Tpr6g1330 . . Vian2g01793 Vifa5g02161 . . Vivi6g03589 .
Pvu1g1222 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1223 . . . . . . . . . . Amo06g1871 . Arst6g02425 . . . . . . Dod01g2112 . . Gma19g01206 Gma03g01143 Gso19g1058 Gso3g1044 . . . Lan10g0821 . . . Lasa3g02560 . . . . . . . . . . . Phco2g01375 . . Pste5g01412 . . . . . . . . Tsu07g03183 . . Vimu6g03243 . Vivi6g03590 .
Pvu1g1224 Acco02g1001 Accr2g02721 Adu06g01869 . Aev06g1457 Ahy16g2004 Ahy6g1724 Aip06g02180 Alju01g0995 . Amo06g1870 Apr4g1341 Arst6g02424 . Bisa03g2512 Bva04g02070 Car03g01988 Cca07g00513 Dere01g2296 Dod01g2113 . Glsi12g2311 Gma19g01207 Gma03g01144 Gso19g1059 Gso3g1045 Lal8g0928 . Lal10g0567 Lan10g0822 . . Lapu1g00298 Lasa3g02561 Lele05g0777 Lele06g0617 Lele07g0811 Lele08g0618 Lja1g1445 . . . Mibi02g0902 . . Phco2g01376 Prci1g3419 . Pste5g01410 Pumo5g02467 Rops8g02650 Seca2g03767 Spst1g03542 Ssu4g1625 Sto8g1447 Tpr6g1332 . Tsu07g03186 Vian2g01794 Vifa5g02162 Vimu6g03242 . Vivi6g03591 .
Pvu1g1225 . . . . Aev06g1452 Ahy16g2000 Ahy6g1720 Aip06g02170 . Amo16g2576 Amo06g1848 Apr4g1337 . . . . Car03g01995 Cca07g00509 . Dod01g2115 . . Gma19g01208 Gma03g01150 Gso19g1060 Gso3g1051 . . . . . . . . . . . . Lja1g1443 Mal3g3273 Mepo3g02634 . . Mtr7g2442 Phac1g01615 . Prci1g3413 Psa3g1908 . . . . . Ssu4g1619 Sto8g1443 Tpr6g1335 . Tsu07g03190 . . . . . .
Pvu1g1226 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1227 . . Adu10g02682 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g1228 . . Adu06g01859 . Aev06g1450 Ahy16g1997 Ahy6g1717 Aip06g02166 . . Amo06g1841 Apr4g1336 Arst6g02412 . . . Car03g01996 Cca07g00508 . Dod01g2116 . . Gma19g01209 Gma03g01151 . Gso3g1052 Lal8g0925 . . Lan10g0825 . . Lapu1g00295 Lasa3g02568 . . . . Lja1g1442 . . . . . . Phco2g01379 . Psa3g1906 Pste5g01392 Pumo5g02474 Rops8g02657 Seca2g03775 Spst1g03539 Ssu4g1618 . Tpr6g1336 . Tsu07g03191 Vian2g01796 Vifa5g02173 Vimu6g03239 . Vivi6g03603 .
Pvu1g1229 . . Adu06g01856 Aed4g0540 Aev06g1449 Ahy16g1994 Ahy6g1715 Aip06g02162 . . Amo06g1839 Apr4g1335 . . . Bva04g02075 Car03g01997 Cca07g00507 . Dod01g2118 . . Gma19g01210 Gma03g01152 Gso19g1061 Gso3g1053 Lal8g0923 . Lal10g0576 Lan10g0828 . . . . . . . . Lja1g1441 . . . . . . . . Psa3g1905 . . . . . Ssu4g1617 . Tpr6g1337 . Tsu07g03196 . Vifa2g00223 . . . .
Pvu1g1230 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g1221 Chr1 32920502 32923326 +
Adu Adu06g01871 Chr06 78264949 78273607 -
Aev Aev06g1458 Chr06 10301329 10308779 -
Ahy Ahy16g2005 Chr16 110335348 110344091 -
Ahy Ahy6g1725 Chr6 82813990 82822739 -
Aip Aip06g02181 Chr06 98247504 98256161 -
Amo Amo16g2602 Chr16 113918436 113927151 -
Apr Apr4g1342 Chr4 12936146 12951246 -
Arst Arst6g02426 Chr6 77412640 77421185 -
Car Car03g01987 Chr03 65940972 65957567 +
Cca Cca07g00514 Chr07 7261408 7274884 -
Lal Lal8g0929 Chr8 6985771 6995072 -
Lapu Lapu1g00299 Chr1 11807031 11821939 -
Lasa Lasa3g02559 Chr3 566282351 566284361 +
Lja Lja1g1446 Chr1 15523490 15533132 -
Pste Pste5g01414 Chr5 9014334 9016380 -
Pumo Pumo5g02466 Chr5 67812138 67826176 +
Rops Rops8g02649 Chr8 60162717 60174043 +
Seca Seca2g03766 Chr2 116282427 116293584 +
Spst Spst1g03543 Chr1 44626468 44643925 -
Ssu Ssu4g1626 Chr4 28205049 28214876 -
Tpr Tpr6g1330 Chr6 14028706 14039033 +
Vian Vian2g01793 Chr2 36253127 36275534 +
Vifa Vifa5g02161 Chr5 718416555 718425373 +
Vivi Vivi6g03589 Chr6 129298299 129307833 +
Pvu Pvu1g1222 Chr1 32932909 32933887 +
Pvu Pvu1g1223 Chr1 32934205 32940925 +
Amo Amo06g1871 Chr06 68101502 68109198 -
Arst Arst6g02425 Chr6 77412640 77421185 -
Dod Dod01g2112 Chr01 57664461 57673423 +
Gma Gma19g01206 Chr19 40775629 40787242 +
Gma Gma03g01143 Chr03 36702233 36714416 +
Gso Gso19g1058 Chr19 38316096 38328836 +
Gso Gso3g1044 Chr3 35217403 35229509 +
Lan Lan10g0821 Chr10 11685309 11694842 +
Lasa Lasa3g02560 Chr3 566284585 566292348 +
Phco Phco2g01375 Chr2 42670977 42687580 +
Pste Pste5g01412 Chr5 9005152 9014298 -
Tsu Tsu07g03183 Chr07 37794836 37804769 +
Vimu Vimu6g03243 Chr6 29037038 29048629 -
Vivi Vivi6g03590 Chr6 129298300 129307833 +
Pvu Pvu1g1224 Chr1 32974929 32977897 +
Acco Acco02g1001 Chr02 7036678 7038072 +
Accr Accr2g02721 Chr2 63120832 63121293 -
Adu Adu06g01869 Chr06 78253140 78254438 -
Aev Aev06g1457 Chr06 10296507 10297868 -
Ahy Ahy16g2004 Chr16 110237418 110242211 -
Ahy Ahy6g1724 Chr6 82801348 82805786 -
Aip Aip06g02180 Chr06 98152517 98155408 -
Alju Alju01g0995 Chr01 7418925 7420331 +
Amo Amo06g1870 Chr06 68088551 68093038 -
Apr Apr4g1341 Chr4 12932063 12933421 -
Arst Arst6g02424 Chr6 77400450 77402273 -
Bisa Bisa03g2512 Chr03 37980287 37981897 -
Bva Bva04g02070 Chr04 20310987 20313854 +
Car Car03g01988 Chr03 65959882 65962569 +
Cca Cca07g00513 Chr07 7257239 7260102 -
Dere Dere01g2296 Chr01 37199743 37201338 +
Dod Dod01g2113 Chr01 57677490 57679571 +
Glsi Glsi12g2311 Chr12 37468666 37470033 +
Gma Gma19g01207 Chr19 40791587 40794648 +
Gma Gma03g01144 Chr03 36721306 36722745 +
Gso Gso19g1059 Chr19 38329797 38333781 +
Gso Gso3g1045 Chr3 35230760 35238430 +
Lal Lal8g0928 Chr8 6980944 6982272 -
Lal Lal10g0567 Chr10 13291119 13293063 +
Lan Lan10g0822 Chr10 11699674 11703250 +
Lapu Lapu1g00298 Chr1 11743481 11744886 -
Lasa Lasa3g02561 Chr3 566319908 566321233 +
Lele Lele05g0777 Chr05 4597354 4598958 +
Lele Lele06g0617 Chr06 3708474 3710081 +
Lele Lele07g0811 Chr07 4669112 4670707 +
Lele Lele08g0618 Chr08 3749435 3751042 +
Lja Lja1g1445 Chr1 15519442 15520815 -
Mibi Mibi02g0902 Chr02 8781911 8783407 +
Phco Phco2g01376 Chr2 42702282 42703679 +
Prci Prci1g3419 Chr1 51627522 51631184 -
Pste Pste5g01410 Chr5 8999723 9001123 -
Pumo Pumo5g02467 Chr5 67830438 67831817 +
Rops Rops8g02650 Chr8 60175182 60179197 +
Seca Seca2g03767 Chr2 116305899 116309156 +
Spst Spst1g03542 Chr1 44624359 44625759 -
Ssu Ssu4g1625 Chr4 28198170 28199552 -
Sto Sto8g1447 Chr8 9240631 9244110 -
Tpr Tpr6g1332 Chr6 14051686 14054874 +
Tsu Tsu07g03186 Chr07 37882080 37884936 +
Vian Vian2g01794 Chr2 36278895 36280265 +
Vifa Vifa5g02162 Chr5 718445850 718447175 +
Vimu Vimu6g03242 Chr6 29019885 29021240 -
Vivi Vivi6g03591 Chr6 129312939 129315223 +
Pvu Pvu1g1225 Chr1 33062004 33066300 -
Aev Aev06g1452 Chr06 10261769 10266856 +
Ahy Ahy16g2000 Chr16 109669816 109675799 +
Ahy Ahy6g1720 Chr6 82003627 82008801 +
Aip Aip06g02170 Chr06 97645717 97650593 +
Amo Amo16g2576 Chr16 113008361 113013963 +
Amo Amo06g1848 Chr06 67050068 67055282 +
Apr Apr4g1337 Chr4 12885217 12890438 +
Car Car03g01995 Chr03 66017744 66023334 -
Cca Cca07g00509 Chr07 7222911 7227475 +
Dod Dod01g2115 Chr01 57718936 57724806 -
Gma Gma19g01208 Chr19 40794305 40800108 -
Gma Gma03g01150 Chr03 36875992 36880772 -
Gso Gso19g1060 Chr19 38335500 38340603 -
Gso Gso3g1051 Chr3 35384390 35389007 -
Lja Lja1g1443 Chr1 15509851 15515294 +
Mal Mal3g3273 Chr3 108860659 108862430 -
Mepo Mepo3g02634 Chr3 36279333 36281156 -
Mtr Mtr7g2442 Chr7 40841814 40843651 -
Phac Phac1g01615 Chr1 24156733 24160791 -
Prci Prci1g3413 Chr1 51601257 51605232 +
Psa Psa3g1908 Chr3 172293708 172295840 +
Ssu Ssu4g1619 Chr4 28083769 28088806 +
Sto Sto8g1443 Chr8 9213169 9217032 +
Tpr Tpr6g1335 Chr6 14082991 14088132 -
Tsu Tsu07g03190 Chr07 37927686 37931991 -
Pvu Pvu1g1226 Chr1 33104534 33105922 +
Pvu Pvu1g1227 Chr1 33107998 33109135 +
Adu Adu10g02682 Chr10 103467133 103473144 -
Pvu Pvu1g1228 Chr1 33121037 33127856 -
Adu Adu06g01859 Chr06 77353913 77371939 +
Aev Aev06g1450 Chr06 10240361 10251244 +
Ahy Ahy16g1997 Chr16 108937995 108947518 -
Ahy Ahy6g1717 Chr6 81887024 81905370 +
Aip Aip06g02166 Chr06 96907699 96917248 +
Amo Amo06g1841 Chr06 66930677 66948778 +
Apr Apr4g1336 Chr4 12874279 12877953 +
Arst Arst6g02412 Chr6 76501899 76520806 +
Car Car03g01996 Chr03 66026854 66031184 -
Cca Cca07g00508 Chr07 7205987 7210962 +
Dod Dod01g2116 Chr01 57731220 57742495 -
Gma Gma19g01209 Chr19 40823431 40827149 -
Gma Gma03g01151 Chr03 36886218 36890926 -
Gso Gso3g1052 Chr3 35394460 35399230 -
Lal Lal8g0925 Chr8 6918682 6927869 +
Lan Lan10g0825 Chr10 11843750 11848053 -
Lapu Lapu1g00295 Chr1 11702784 11709290 +
Lasa Lasa3g02568 Chr3 567498511 567501486 -
Lja Lja1g1442 Chr1 15496953 15503074 +
Phco Phco2g01379 Chr2 42732620 42737883 -
Psa Psa3g1906 Chr3 172274979 172278164 +
Pste Pste5g01392 Chr5 8932161 8938174 +
Pumo Pumo5g02474 Chr5 68692461 68696753 -
Rops Rops8g02657 Chr8 60292386 60298237 -
Seca Seca2g03775 Chr2 116506789 116512090 -
Spst Spst1g03539 Chr1 44583299 44589482 +
Ssu Ssu4g1618 Chr4 28052540 28058807 +
Tpr Tpr6g1336 Chr6 14092551 14096509 -
Tsu Tsu07g03191 Chr07 37936189 37940407 -
Vian Vian2g01796 Chr2 36289339 36292979 -
Vifa Vifa5g02173 Chr5 722478992 722492014 -
Vimu Vimu6g03239 Chr6 29000132 29004084 +
Vivi Vivi6g03603 Chr6 129646652 129650075 -
Pvu Pvu1g1229 Chr1 33145451 33148196 -
Adu Adu06g01856 Chr06 77245261 77248150 +
Aed Aed4g0540 Chr4 4485273 4493025 -
Aev Aev06g1449 Chr06 10225227 10227902 +
Ahy Ahy16g1994 Chr16 108544648 108547701 +
Ahy Ahy6g1715 Chr6 81776056 81778970 +
Aip Aip06g02162 Chr06 96585680 96590100 +
Amo Amo06g1839 Chr06 66819565 66822683 +
Apr Apr4g1335 Chr4 12865386 12867783 +
Bva Bva04g02075 Chr04 20331872 20333774 -
Car Car03g01997 Chr03 66034792 66037464 -
Cca Cca07g00507 Chr07 7189567 7191927 +
Dod Dod01g2118 Chr01 57762351 57765708 -
Gma Gma19g01210 Chr19 40836743 40839322 -
Gma Gma03g01152 Chr03 36899619 36902115 -
Gso Gso19g1061 Chr19 38377396 38379959 -
Gso Gso3g1053 Chr3 35407650 35410236 -
Lal Lal8g0923 Chr8 6879172 6881769 +
Lal Lal10g0576 Chr10 13411068 13414121 -
Lan Lan10g0828 Chr10 11895881 11899007 -
Lja Lja1g1441 Chr1 15485148 15487249 +
Psa Psa3g1905 Chr3 172227752 172230163 +
Ssu Ssu4g1617 Chr4 28031979 28034145 +
Tpr Tpr6g1337 Chr6 14112995 14116181 -
Tsu Tsu07g03196 Chr07 37957828 37961058 -
Vifa Vifa2g00223 Chr2 27548636 27551575 -
Pvu Pvu1g1230 Chr1 33243744 33244291 -
Vifa Vifa2g00223 Chr2 27548636 27551575 -