Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0540 ATGGCAGCCATAGCAGCAGCCACGAACGGCAACGGCAATGGGAACCATAGTTCCCGTTCTCGGCCGGAGTACATTCCCAACCACATCCCCGACCCATCCTACGTCCGCATCCATGACACCACGCTTCGCGACGGCGAGCAGGCCCCCGGAGCCGCCATGACATCCGACCAGAAGCTCCGGATCGCCCGGCAGCTCGCGAAGCTGGGCGTGGACGTCATCGAAGCCGGGTTCCCCTCGGCGTCGCAGGAAGACTTCAAAGCCGTGAAAATGATAGCGCAGGAAATCGGCAACAACGACTGCGATGACCATGTTCCGGTGATCGCAGCCCTCTGCAGGTGCAATGAGAAGGACATCGCGACGGCGTGGGAGGCTGTGAAACACGCTAAGAGGCCAAAGCTGATGCCTTTCATAGCAGTGAGCCCCATTCACATGGAGTACAAGCTGAGCAAGACTAAGGAAGAGGTACTTCAAATAGCTTGCAATATGATCAAATTCGCACGCACTTTAGGGTGCCGTGACATCCAGTTCTGTGCTGAAGATGCAGCCAGATCGGAAAGAGAGTTTCTTTATCAAATTTTGGAAGAAGTGATCAAAGCTGGGGCAACAACTCTGGGCTTAGGTGACACTGTTGGCATAACAATGCCATTTGAGATTAGACAATTGATTTCTGACATAAAAGCCAATGTCCCTGGTGCTCAAAATGTTATTATTTCTATCCACTGTCATAATGATCTTGGACATGCTACTGCAAACACAATAGAGGCTGCTCGTGCTGGTGCAGGCCAATTAGAAGTAACAATTAATGGGATTGGTGAAAGGGCTGGTAATGCTGCATTAGAAGAGGTTGTGATGGCCCTAAAATGCAGGGGAGATCATGTCTTAGATGGTCTGTATACTGGAATTAATACAAGGCACATATTGAAGACAAGCAAGATGGTCGAAGAGTTCTCTGGTATGTATTTACAACCACACAAAGCTATTGCTGGAATGTTAAAGCATAGAGGTACATATGAAATACTATCTCCCGAAGATATTGGTCATGAAAAGTCCAATGGAGCTAATATGGTACTGGGGAAGCTAAGTGGACGCCAAGCTTTGAAAAATCGACTCAAAGAGCTTGGTTATGAACTTAGGGATGATGAAGTTGAGAGTGTGTTTTGGAACTTCAAAGCAATAGCCGAGAAAAAGAAGAGAGTTACCGATGCTGACCTCAAAGCATTGGTATCAGATCAGGTTTGTCATGTTGAACCTATTTGGAAGCTTGGTGATTTGCAGGTGACATGTGGAAATATGGGTTCTTCAACAGCAACTATTAAACTTGTTACTAGTGATGGTAGCACACATGTTGCTTGTTCTATTGGTGTGGGACCAGTAGATTCAGCTTACAAGGCTATCAATCTCATTGTGAAGGAAACTGTAAAAGTACTTGAGTACTCACTAGCTACCATTACAGAAGGTACTGATGCAATTGCAACTACACGTGTTGTAATTCGTAGAGAGAAGAGCAAATCACCTACGCCTGCTATGAATGGAAACATTATTTATCCAACATTTAGTGGTACCGGAGAAGGAGTGGATCTTGTTACTTCTAGTGTAGAGGCTTATCTTACCGCAATAAACAAAATGCTCGATTTGAAGGAATGA 1644 0.4592 MAAIAAATNGNGNGNHSSRSRPEYIPNHIPDPSYVRIHDTTLRDGEQAPGAAMTSDQKLRIARQLAKLGVDVIEAGFPSASQEDFKAVKMIAQEIGNNDCDDHVPVIAALCRCNEKDIATAWEAVKHAKRPKLMPFIAVSPIHMEYKLSKTKEEVLQIACNMIKFARTLGCRDIQFCAEDAARSEREFLYQILEEVIKAGATTLGLGDTVGITMPFEIRQLISDIKANVPGAQNVIISIHCHNDLGHATANTIEAARAGAGQLEVTINGIGERAGNAALEEVVMALKCRGDHVLDGLYTGINTRHILKTSKMVEEFSGMYLQPHKAIAGMLKHRGTYEILSPEDIGHEKSNGANMVLGKLSGRQALKNRLKELGYELRDDEVESVFWNFKAIAEKKKRVTDADLKALVSDQVCHVEPIWKLGDLQVTCGNMGSSTATIKLVTSDGSTHVACSIGVGPVDSAYKAINLIVKETVKVLEYSLATITEGTDAIATTRVVIRREKSKSPTPAMNGNIIYPTFSGTGEGVDLVTSSVEAYLTAINKMLDLKE 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0540 547 Pfam HMGL-like 35 313 IPR000891 GO:0003824
Aed4g0540 547 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 2. 237 250 IPR002034 GO:0019752|GO:0046912
Aed4g0540 547 Gene3D - 324 423 - -
Aed4g0540 547 Coils Coil 363 383 - -
Aed4g0540 547 Pfam LeuA allosteric (dimerisation) domain 399 543 IPR013709 GO:0003852|GO:0009098
Aed4g0540 547 SMART LeuA_dimer_2 398 543 IPR013709 GO:0003852|GO:0009098
Aed4g0540 547 ProSitePatterns Alpha-isopropylmalate and homocitrate synthases signature 1. 42 58 IPR002034 GO:0019752|GO:0046912
Aed4g0540 547 CDD DRE_TIM_IPMS 37 315 - -
Aed4g0540 547 MobiDBLite consensus disorder prediction 8 22 - -
Aed4g0540 547 SUPERFAMILY Aldolase 32 329 - -
Aed4g0540 547 MobiDBLite consensus disorder prediction 1 26 - -
Aed4g0540 547 PANTHER HOMOCITRATE SYNTHASE-RELATED 13 444 - -
Aed4g0540 547 Gene3D Aldolase class I 31 318 IPR013785 -
Aed4g0540 547 ProSiteProfiles Pyruvate carboxyltransferase domain. 35 307 IPR000891 GO:0003824
Aed4g0540 547 PANTHER 2-ISOPROPYLMALATE SYNTHASE-RELATED 13 444 - -
Aed4g0540 547 SUPERFAMILY 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 433 542 IPR036230 -
Aed4g0540 547 Gene3D - 424 543 IPR036230 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0540 Aed-Chr4 4485273 4493025 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0540 K01649 - gmx:100816439 926.391