Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g02161 ATGGTGAATCCGCCGAGATTGGTTTCGGGGAATAAGTCTGTGAATTCTGTGAAGATAAGCTTTCGTGTACCGTATTTTACTCAATGGGGTGAGAGTTTGGTGGTGTGTGGCTCTGTACCAGTGCTTGGATCTTGGAATGTGAAGAAGGGTGTGTTGCTCAGTCCCTTTCATGAAGGTTCTGAGCTCATTTGGAGTGGAAGTATTACTGTGCCAAAAGGGTTCAAATGTGAGTATAGTTATTTTGTTGTGGATGATAAGAGAAATATTGTGAGATGGGAGATGGGGAAGAAACACGAAGTCGCGATCCCTGAAGGTGTTCAGAGTGGTCAGGAGATCGAGTTTCGTGATCTTTGGCAGACTGGCTCAGATGCTCTCCCTTTCAGAAGTGCTTTCAGAGATGTCATTTTTCGGCAAAGTTGGGATTCGAGCACCATCACAACCACGGGAGTCAACCACATCACTTTTGAACCAGAAGCAGAATCCATCTTCATCCAATTCAAAATTTTCTGCCCAACTATTGAGAAAGACACATCAATATACGTGATAGGTAGCAACATGAAGTTGGGGCAGTGGAAAGTTGAAAATGGACTAAAACTCAGCTATGTTGGTGAATTTGTATGGCTAGCTGAATGTGTGATGCAAAGGAGTGATTTTCCAATAAGATATAGATATTGTAAATATGACAGGTCTGGGAACGCTTCTATAGAAAACGGTCCAAATCGAGAAGTCTCAATTAACTCTTCAAGAAGAGAAGCAAAATATATTTTTCTTTCAGATGGCATGATACGAGAAACTCCCTGGCGTGGTGCTGGTGTAGCAATTCCTATGTTCTCTATTAGGTCAGAATCTGATCTAGGAGTTGGGGAGTTTCTTGACCTTAAGTTACTAGTTGACTGGGCTGTAGCATCTGGTTTCCATTTAGTTCAACTTTTACCAATCAATGATACATCTGTTCATCAGATGTGGTGGGATTCTTATCCATACAGTTCACTCTCAGTATTTGCACTGCATCCATTGTACCTGAGAGTACAGGCACTTTCTGAGAACATACCAGAGGAGATCAAGCAAGAGATTGAGAAGGCAAAACAACAACTAGATGTGAAGGATGTTGATTATGAAGCTACATTGTCTACTAAACTCTCAATTGCGAAGAAAGTTTTCAATCAAGAGAAAGATTTGATACTTAATTCAAGTTCCTTTCAGGAGTTCTTTTCTGAAAATGAGGGTTGGTTGAAACCCTACGCTGCTTTCTGTTTCCTGCGGGATTTCTTTGAAACATCGGAACGAAGTCAATGGGGCAGTTTTGCTAATTATTCAGAAGATAAGTTAGAGAAACTTGTATCCAAGGAAAGTCTGCATTACGAGATAATTCGCTTCCACTACTATGTTCAATACCATCTGCATTTACAATTGTCGGAAGCTTCAGAATACGCAAGAAAGAAGGGAGTGATTCTAAAGGGAGATCTTCCCATCGGAGTTGACAGAAACAGTGTGGATACTTGGGTTTATCCAAATTTATTTCGAATGAACACTTCTACTGGGGCACCTCCTGACTATTTTGATAAAAATGGCCAGAATTGGGGCTTTCCTACTTATAATTGGGAAGAGATGTCAAAAGACAACTATGGTTGGTGGCGAGCTCGATTGACACAGATGGGAAAATATTTCACAGCTTACAGGATTGATCACATATTGGGATTCTTCCGAATCTGGGAACTTCCAGAACATGCTGTGACAGGTCTAGTCGGAAAATTCCGACCATCTATTCCTCTAAGTCAGGAAGAACTTGAAAGAGAAGGAATATGGGACTTTAATCGCCTGAGCCGCCCATACATTAGACAGGAAACATTACAGGAAAAATTTGGATCTGCTTGGACATTCGTTGCAACAACTTTTCTGAACGAATATGAAAAGAATTGCTATGAGTTCAAGGAGGATAGCAACACAGAGAAAAAAATTGTTTCCAAACTGAAAACTTCTGCAGAAAATTCTCTGTTGTTGGAGAGTGAAGACAAAATCCGGCGTAGCCTGTTTGATCTTTTACAGAATATAGTTCTTATCCGAGATCCAGAGAATCCAAAAGATTTTTATCCTCGTTTCAACCTTGAAGATACCTCGAGTTTCCAGGCATTGGATGATCATAGCAAGAATGTTCTCAAAAGATTGTATTATGACTACTATTTCCAACGTCAAGAGAATCTTTGGAGGCAAAATGCGCTTAAGACTCTACCTGCACTTCTAAATTCATCAGAGATGCTGGCCTGCGGGGAAGATTTGGGCCTCATTCCATCTTGTGTGCATCCTGTTATGCAAGAACTTGGATTAGTTGGGCTGCGCATCCAACGGATGCCCAATGAATCTGATCTGGAATTTGGCATTCCTTCTAAATACAGCTACATGACGGTATGTGCTCCTTCTTGTCATGACTGTTCCACCTTGCGTGCTTGGTGGGAAGAAGACGAAGAAAGAAGGCAACGATTTTTCAAGAATGTGATGGAGTCTGATGAGTTGCCACCTGATCAATGTGTTCCAGAAGTTGCTCATTATATCATAAGGCAACATATTGAATCCCCATCGATGTGGGCAATTTTCCCTCTTCAGGACTTGTTGGCATTAAAAGAAGAATATACAGCACGCCCTGCAACAGAAGAGACAATCAATGACCCTACAAATCCGAAGCACTATTGGAGATACCGTACGCATGTGACTCTGGAGTCATTAAATAAAGATAATGATCTCCAAACCATCATTAAAGATCTTGTACGTTGGGGTGGAAGATCAATTCCTCCAGAAGAATCACAAGTTGAAGATGCTGTCTCTGAGAAGCCACAGTTTGTCTCAACTGGCGTAAAGATCCGTAATCCTTCTGAATCTAATGGAGTTTCATTGAAGGATCCTTTGTCTGTCTCTTGA 2913 0.4113 MVNPPRLVSGNKSVNSVKISFRVPYFTQWGESLVVCGSVPVLGSWNVKKGVLLSPFHEGSELIWSGSITVPKGFKCEYSYFVVDDKRNIVRWEMGKKHEVAIPEGVQSGQEIEFRDLWQTGSDALPFRSAFRDVIFRQSWDSSTITTTGVNHITFEPEAESIFIQFKIFCPTIEKDTSIYVIGSNMKLGQWKVENGLKLSYVGEFVWLAECVMQRSDFPIRYRYCKYDRSGNASIENGPNREVSINSSRREAKYIFLSDGMIRETPWRGAGVAIPMFSIRSESDLGVGEFLDLKLLVDWAVASGFHLVQLLPINDTSVHQMWWDSYPYSSLSVFALHPLYLRVQALSENIPEEIKQEIEKAKQQLDVKDVDYEATLSTKLSIAKKVFNQEKDLILNSSSFQEFFSENEGWLKPYAAFCFLRDFFETSERSQWGSFANYSEDKLEKLVSKESLHYEIIRFHYYVQYHLHLQLSEASEYARKKGVILKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYGWWRARLTQMGKYFTAYRIDHILGFFRIWELPEHAVTGLVGKFRPSIPLSQEELEREGIWDFNRLSRPYIRQETLQEKFGSAWTFVATTFLNEYEKNCYEFKEDSNTEKKIVSKLKTSAENSLLLESEDKIRRSLFDLLQNIVLIRDPENPKDFYPRFNLEDTSSFQALDDHSKNVLKRLYYDYYFQRQENLWRQNALKTLPALLNSSEMLACGEDLGLIPSCVHPVMQELGLVGLRIQRMPNESDLEFGIPSKYSYMTVCAPSCHDCSTLRAWWEEDEERRQRFFKNVMESDELPPDQCVPEVAHYIIRQHIESPSMWAIFPLQDLLALKEEYTARPATEETINDPTNPKHYWRYRTHVTLESLNKDNDLQTIIKDLVRWGGRSIPPEESQVEDAVSEKPQFVSTGVKIRNPSESNGVSLKDPLSVS 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g02161 970 SMART CBM_20_2 161 255 IPR002044 GO:2001070
Vifa5g02161 970 SMART CBM_20_2 16 112 IPR002044 GO:2001070
Vifa5g02161 970 SUPERFAMILY (Trans)glycosidases 267 920 IPR017853 -
Vifa5g02161 970 PANTHER - 14 927 - -
Vifa5g02161 970 SUPERFAMILY Starch-binding domain-like 15 118 IPR013784 GO:0030246
Vifa5g02161 970 MobiDBLite consensus disorder prediction 949 970 - -
Vifa5g02161 970 Pfam 4-alpha-glucanotransferase 274 902 IPR003385 GO:0004134|GO:0005975
Vifa5g02161 970 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 11 120 IPR002044 GO:2001070
Vifa5g02161 970 Gene3D Glycosidases 721 926 - -
Vifa5g02161 970 SUPERFAMILY Starch-binding domain-like 160 249 IPR013784 GO:0030246
Vifa5g02161 970 CDD CBM20_DPE2_repeat2 164 260 IPR034841 GO:2001070
Vifa5g02161 970 Gene3D Glycosidases 267 597 - -
Vifa5g02161 970 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 156 269 IPR002044 GO:2001070
Vifa5g02161 970 Pfam Starch binding domain 17 109 IPR002044 GO:2001070
Vifa5g02161 970 Pfam Starch binding domain 164 252 IPR002044 GO:2001070
Vifa5g02161 970 Gene3D Immunoglobulins 9 120 IPR013783 -
Vifa5g02161 970 Gene3D Immunoglobulins 154 257 IPR013783 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g02161 17 955 Glycoside Hydrolase AT2G40840 71.565 0.0 1457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g02161 K00705 - gmx:100809128 1694.09