Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g03539 ATGTCAATGGCACTCTCTCAGCTAAGCCACTCTCTTCAAAATGAACTGAAAACTGAAGACTCAGAATTCCCTTTCAAGGAAATTGGAAATGAAGGTCTCACAAAACGGATTCTCAGAAAAGGAGTCACTTGGCAAACTCCTTTTTCTGGAGATGAAGTGGAAGTTCATTTCAGAGGACATGTTGAGAATGGAGCATCTCTTGAATCCAGTTATGATAAAGGGTCCACTTTTCGTTTTACATTAGGCCAATGTGAAGTTATCAAAGGATGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCTAACTTGGCATATGGAGAAGAAGGGTCTCCTCCATTGGTTCCTCCCAATGCAACTCTCATTTATGACATTGAAATGCTGTCTTGGAGTAACATAAGGAATTTGACTGGTGATGGAGGAATCATGAAAAAGCTAATAAGAGAGGGAGAAGGATGGGCAACTCCAAGAGAGGATGATGAGGTGCTAGTGAAATATGAAGCAACGCTGGAGAATGGGATGGTTGTCTCCAAGTCTGATCAGGGAGTGGAGTTGAATGTAAGTGATGGCTATCTATGTCCTGCAATGAGTATAGCAGTAAAGACAATGAGAAAGGGCGAAGTGGCAGAGCTAGCTGTGAGATTTTTTTATGGGCACAGTCAAAATTCAGATATGATCACTGAGCTAGATGGTGTTCTTCCACCAGATTCTAATTTAACTAGCATCAAGCTTGAGCTGGTATCATGGAAAATTGTTACTGATGTCACAGGAGATAAGAAGATACTGAAAAAAATAATTAAAGTGGGTGAGGGGTTTGATCGTCCAAACGAGGGATCCCAAGTGAAAGTGATATATTTGTGTAAAGGGGAAGATGACACTGTTATTGAGAGGAAAGGGTCAGACGAAGAACCTTTTGAGTTCACAACTCAGGAAGAACAGGTACCCGAGGGTCTTGAAAGAGCAATAATGACAATGAAAAAAGCAGAACAAGCTCTTGTAACCGTTCGTGCTGAATATTTTTGCGGCTATAGTAATTCACAGGGAAACACAGCCAATAATAAAGTCCTTTATTATGAAGTTGAGTTGGTTGATTTCGTTAAGGAAAAGCCATTTTGGAAAATGGACACACAAGAGAAAATAGAAGCTTGTCAGAGGAAGAAGCATGATGGAAATCTGCTGTTCAAAGCTGAAAATTTCTGGCGCGCATCTAAGAAATATGAAAAGGCTGTAAAGTACATTGAGTTTGATCACTCATTCAGTGAAGATGAGAAACATCGCTCTAATACCTTACGTTTATCATGTAATTTGAACAATGCTGCCTGTAAACTTAAATTGGGGGAGTACATTGAAGCTTCAAAACTCTGCACAAAGGTCCTAGAACAAGAGCCTTCAAATATCAAGGCTCTTTATAGAAGATGCCAAGCATACTTGAAAACATCAGACTTGGAGAAAGCTGAGGCTGACATTAAAACAGCATTGGTTATTGATCCAAATAACAGAGACATTAAACTTGAGTACAAAGAGCTGAAACATAAGCAAAAGGAATACAGTAAATATGAAGCTGACATCTTCAGCACAATGGTTTCAAGAATGAGCTAG 1620 0.3975 MSMALSQLSHSLQNELKTEDSEFPFKEIGNEGLTKRILRKGVTWQTPFSGDEVEVHFRGHVENGASLESSYDKGSTFRFTLGQCEVIKGWDEGVATMKKGERAIFKIPPNLAYGEEGSPPLVPPNATLIYDIEMLSWSNIRNLTGDGGIMKKLIREGEGWATPREDDEVLVKYEATLENGMVVSKSDQGVELNVSDGYLCPAMSIAVKTMRKGEVAELAVRFFYGHSQNSDMITELDGVLPPDSNLTSIKLELVSWKIVTDVTGDKKILKKIIKVGEGFDRPNEGSQVKVIYLCKGEDDTVIERKGSDEEPFEFTTQEEQVPEGLERAIMTMKKAEQALVTVRAEYFCGYSNSQGNTANNKVLYYEVELVDFVKEKPFWKMDTQEKIEACQRKKHDGNLLFKAENFWRASKKYEKAVKYIEFDHSFSEDEKHRSNTLRLSCNLNNAACKLKLGEYIEASKLCTKVLEQEPSNIKALYRRCQAYLKTSDLEKAEADIKTALVIDPNNRDIKLEYKELKHKQKEYSKYEADIFSTMVSRMS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g03539 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 281 370 IPR001179 GO:0003755
Spst1g03539 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 162 230 IPR001179 GO:0003755
Spst1g03539 539 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 47 135 IPR001179 GO:0003755
Spst1g03539 539 SUPERFAMILY FKBP-like 143 229 - -
Spst1g03539 539 Gene3D Tetratricopeptide repeat domain 376 533 IPR011990 GO:0005515
Spst1g03539 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 166 246 IPR001179 GO:0003755
Spst1g03539 539 SMART tpr_5 390 423 IPR019734 GO:0005515
Spst1g03539 539 SMART tpr_5 473 506 IPR019734 GO:0005515
Spst1g03539 539 SMART tpr_5 439 472 IPR019734 GO:0005515
Spst1g03539 539 PANTHER PEPTIDYLPROLYL ISOMERASE 27 141 - -
Spst1g03539 539 Pfam Tetratricopeptide repeat 450 506 - -
Spst1g03539 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 50 138 IPR001179 GO:0003755
Spst1g03539 539 Gene3D - 6 140 IPR046357 GO:0003755
Spst1g03539 539 SUPERFAMILY TPR-like 383 534 IPR011990 GO:0005515
Spst1g03539 539 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 285 373 IPR001179 GO:0003755
Spst1g03539 539 FunFam Peptidylprolyl isomerase 5 139 - -
Spst1g03539 539 SUPERFAMILY FKBP-like 28 139 - -
Spst1g03539 539 Coils Coil 325 345 - -
Spst1g03539 539 Gene3D - 258 375 IPR046357 GO:0003755
Spst1g03539 539 ProSiteProfiles TPR repeat profile. 473 506 IPR019734 GO:0005515
Spst1g03539 539 FunFam Peptidylprolyl isomerase 378 533 - -
Spst1g03539 539 SUPERFAMILY FKBP-like 255 392 - -
Spst1g03539 539 Gene3D - 141 257 IPR046357 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g03539 Spst-Chr1 44583299 44589482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g03539 27 538 Calmodulin-binding Proteins AT5G48570 54.913 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g03539 - - pvu:PHAVU_001G118200g 982.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g03539 1 44583299 44589482 Spst1g03539 1 44583299 44589482 ECH