Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1626 ATGATGAATCCGGGATTGTTTTCTGGGAATAAGTCCGTGAATTCGGTGAAAGTAAGCTTTCGGATACCGTATTTCACCCAGTGGGGTCAGAGCTTGCTGGTGTGTGGCTCTGTACGAGTGCTTGGTTCCTGGAATGTGAAGAAGGGTGTGTTGCTCAGCCCCACTCATCAAGGGGGTGAGCTCATCTGGGGTGGAAGCATCACTGTGCCAAGAGGGTTCCAATGCCAGTACAGCTACTATGTTgtagatgataacaaaaatgtaCTGAGATGGGAGATGGGGAAGAAGCGCGAGCTGATACTCCCTGAAGGGATTCCGAGTGGCCAGGAGATTGAGTTCCGTGATCTTTGGCAGACTGGCTCAGATGCCCTCCCTTTCAGAAGTGCTTTCAGAGATGTCATTTTTCGGCAAAGCTGGAATTTGAGCGACGCAACCGTAGGAGTCAACCACATTAATTTTGAACCGGaagGAGAATCTATCATGGTCCAATTCAAAATTTGCTGCCCAAATATTGAGAAAGACACATCGATATATGTCATTGGTAGCAATACAAAGTTGGGGCAGTGGAAAGTTGAAAGTGGACTAAAACTCAGCTATTTTAGTGAATCTGTCTGGAAAGCTGAGTGTGTGATGCAAAGGAGTGATTTTCCAATAAAATATAGATATGGCAAATATGACAGGAGTGGGAACTTTTCTATAGAGAGTGGTCCAAATCGAGAAGTCTCTACTAACTCCTCAAGGAATGAGGCGAAGTGTATTTTTCTTTCAGATGGCATGATGCGGGAAACACCTTGGCGTGGTGCTGGCGTAGCAATCCCCATGTTTTCTGTTAGGTCGGAATCTGATCTGGGTGTTGGAGAGTTTCTTGACCTTAAGTTACTAGTTGACTGGGCTGTAGCATCTGGTTTCCATTTAGTTCAACTTTTACCAATCAATGATACATCTGTGCATGGGATGTGGTGGGATTCTTATCCATACAGTTCACTCTCAGTCTTTGCGTTGCATCCATTGTACCTGAGAGTACAGGCACTTTCTGAGAACATATCAGAGGAGATCAAGAAAGAGATTGAAAAGGCAAAGCAGCAATTGGATGGGAAGGATGTTGATTATGAAGCTACAATGGCTACTAAACTCTCAATTGCTAAGAAAGTTTTCACTCGAGAGAAAGATTTGATACTTAATTCAAGTTCCTTTCAGGAGTTCTTTTCTGAGAATGAGGGTTGGTTGAAACCTTATGCTGCTTTCTGTTTCCTGCGGGACTTTTTTGAAACCTCAGATCGCAGCCAATGGGGTCGTTTTGCTCATTATTCGGAAGATAAGCTAGAGAAACTTGTATCCAAGGACAGCCTGCATTATGAGATAATTTGCTTCCACTACTATGTTCAATACCATTTACATTTACAATTGTCAGAAGCTGCAGAATATGCAAGAACGAAGGGAGTGATACTAAAGGGAGATCTTCCTATCGGAGTTGACAGAAATAGTGTTGATACCTGGGTTTATCCAAATTTGTTCCGAATGAACACTTCTACTGGGGCACCTCCagattattttgataaaaatggcCAGAATTGGGGTTTCCCTACTTATAATTGGGAAGAAATGTCAAAGGACAACTATGGTTGGTGGCGAGCTCGATTGACACAGATGGCAAAATATTTCACAGCTTACAGGATTGATCACATATTGGGATTCTTCCGAATCTGGGAACTTCCGGATCATGCTGTGACAGGTCTAGTTGGCAAATTCCGACCATCTATTCCTCTTAGTCAGGAAGAACTCGAAAGAGAAGGAATATGGGACTTTAATCGCCTGAGTCGCCCATATATTAAGCAGGAACTATTACAGGAAAAATTTGGAGCTGCTTGGACTTTTGTTGCGACAACTTTTCTAAAAGAGTTTGACAAGAACTGCTATGAGTTCAAGGAGGATAGCAACACAGAGAAAAAGATTGCTTCCAAACTGAAAACTTGTGCAGAAAGTTCTCTCTTGTTGGAGAGCGAAGAAAAATTGCGGCGCAGTCTCTTTGATCTTTCACAGAATATAGTTCTAATCCGAGATCCAGAGGATCCAAGAAAATTTTATCCTCGTTTCAACCTTGAAGATACCTCAAGTTTCCAGGATTTGGATGATCATAgCAAGAATGTTCTCAAAAGATTATACTATGACTACTATTTCTGTCGTCAAGAGAATCTTTGGAGGCAAAATGCATTGAAGACCCTGCCTGTACTTCTAAATTCATCAGACATGCTGGCCTGTGGGGAAGATTTGGGCCTCATTCCATCTTGTGTCCATCCTGTATGCCCATTATGTTTTCCTTAA 2322 0.4186 MMNPGLFSGNKSVNSVKVSFRIPYFTQWGQSLLVCGSVRVLGSWNVKKGVLLSPTHQGGELIWGGSITVPRGFQCQYSYYVVDDNKNVLRWEMGKKRELILPEGIPSGQEIEFRDLWQTGSDALPFRSAFRDVIFRQSWNLSDATVGVNHINFEPEGESIMVQFKICCPNIEKDTSIYVIGSNTKLGQWKVESGLKLSYFSESVWKAECVMQRSDFPIKYRYGKYDRSGNFSIESGPNREVSTNSSRNEAKCIFLSDGMMRETPWRGAGVAIPMFSVRSESDLGVGEFLDLKLLVDWAVASGFHLVQLLPINDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSENISEEIKKEIEKAKQQLDGKDVDYEATMATKLSIAKKVFTREKDLILNSSSFQEFFSENEGWLKPYAAFCFLRDFFETSDRSQWGRFAHYSEDKLEKLVSKDSLHYEIICFHYYVQYHLHLQLSEAAEYARTKGVILKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYGWWRARLTQMAKYFTAYRIDHILGFFRIWELPDHAVTGLVGKFRPSIPLSQEELEREGIWDFNRLSRPYIKQELLQEKFGAAWTFVATTFLKEFDKNCYEFKEDSNTEKKIASKLKTCAESSLLLESEEKLRRSLFDLSQNIVLIRDPEDPRKFYPRFNLEDTSSFQDLDDHSKNVLKRLYYDYYFCRQENLWRQNALKTLPVLLNSSDMLACGEDLGLIPSCVHPVCPLCFP 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1626 773 Coils Coil 342 369 - -
Ssu4g1626 773 Pfam Starch binding domain 16 105 IPR002044 GO:2001070
Ssu4g1626 773 Pfam Starch binding domain 160 250 IPR002044 GO:2001070
Ssu4g1626 773 Gene3D Immunoglobulins 154 255 IPR013783 -
Ssu4g1626 773 Gene3D Immunoglobulins 8 119 IPR013783 -
Ssu4g1626 773 Gene3D Glycosidases 265 596 - -
Ssu4g1626 773 SUPERFAMILY (Trans)glycosidases 265 767 IPR017853 -
Ssu4g1626 773 Pfam 4-alpha-glucanotransferase 272 767 IPR003385 GO:0004134|GO:0005975
Ssu4g1626 773 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 10 119 IPR002044 GO:2001070
Ssu4g1626 773 SUPERFAMILY Starch-binding domain-like 14 117 IPR013784 GO:0030246
Ssu4g1626 773 SUPERFAMILY Starch-binding domain-like 157 247 IPR013784 GO:0030246
Ssu4g1626 773 PANTHER - 11 767 - -
Ssu4g1626 773 SMART CBM_20_2 159 253 IPR002044 GO:2001070
Ssu4g1626 773 SMART CBM_20_2 15 111 IPR002044 GO:2001070
Ssu4g1626 773 CDD CBM20_DPE2_repeat2 162 258 IPR034841 GO:2001070
Ssu4g1626 773 CDD CBM20_DPE2_repeat1 17 117 IPR034840 GO:2001070
Ssu4g1626 773 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 154 267 IPR002044 GO:2001070
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1626 16 767 Glycoside Hydrolase AT2G40840 72.908 0.0 1168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1626 K00705 - gmx:100793021 1463.36