Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1044 ATGGTGAATCCAGGATTGTTTTCTGCGAATAAGTCTGTGAATTCGGTGAAAGTAAGCTTTCGGATACCGTATTTTACCCAATGGGGTCAGACCTTGTTGGTGTGTGGCTCTGTTCCAGTGCTTGGTTCATGGAATGTGAAGAAGGGTGTGCTGCTCAGGCCCATTCATCAAGGGGCTGAGCTCATCTGGGGTGGAAGCATCACTGTGCCAAAAGGGTTCCGATGCCAGTACAGCTATTATGTTGTAGATGATAACAAGAATGTGCTGAGATGGGAGATGGGGAAGAAGCATGAATTGGTACTCCCTGAAGGAATTCGGAGTGGCCACGAGATTGAGTTCCGTGATCTTTGGCAGACTGGCTCAGATGCACTCCCTTTCAGAAGTGCTTTCAAAGATGTAATTTTTCGGCAATGCTGGGATTTGAGTGACACAACCGTAGGAGTAAACCACATTAATATTGAACCGGAAGGAGAAGCTATCTTGGTCCAATTCAAAATATCCTGCCCAAATATTGAGAAAGACACATCAATATATGTCATTGGTAGCAATACAAAGTTGGGGCAGTGGAAAGTTGAAAATGGACTAAAACTCAGCTATTTTGGTGAATCTGTCTGGAAAAGTGAATGCGTGATGCAAAGGAGTGATTTCCCCATAAAATATAGATATGGCAAATATGACAGGTGTGGAAACTTTTCTATAGAGAGTGGTCCAAATCGAGAAGTCTCTACTAACTCCTCAAGGAGTGAGGCAAAATATATTTTTCTTTCAGATGGCATGATGCGGGAAATACCTTGGCGTGGTGCTGGCGTAGCAATCCCAATGTTTTCTATTAGGTCGGAATCTGATCTGGGTGTTGGAGAGTTTCTTGACCTTAAGTTGCTAGTTGACTGGGCTGTAGCAACTGGTTTCCATTTAGTTCAACTTTTACCAATCAATGATACATCTGTGCATGGGATGTGGTGGGATTCTTATCCATACAGTTCACTCTCAGTCTTTGCCTTGCATCCATTGTACCTGAGAGTACAGGCACTTTCTAAGAACATACCCGAGGCGATCAAGAAAGAGATTGAAAAGGCAAAGCAGCAACTAGATGGGAAGGATGTTGATTATGAGGCTACAATGGCTACTAAACTCTCAATTGCTAAGAAAGTTTTTGCTCAAGAGAAAGATTTGATACTTAATTCAAGTTCCTTTAAGGAGTTCTTTTCTGAGAATGAGGGTTGGTTGAAACCCTATGCTGCTTTCTGTTTCCTGCGGGACTTCTTTGAAACATCAGATCGCACTCAATGGGGTCATTTTGCTCATTACTCAGAAGATAAGCTAGAGAAACTTGTATCCAAGGACAGCCTGCATTATGAGATAATTTGCTTCCACTACTATGTTCAATACCATTTACATTTACAATTATCAGAAGCTGCAGAATATGCAAGAAAGAAGGGAGTGATACTAAAGGGAGATCTTCCTATTGGGGTTGACAGAAACAGTGTGGATACCTGGGTGTATCCAAATTTGTTCCGAATGAACACTTCTACTGGGGCACCTCCAGATTATTTTGATAAAAATGGCCAGAATTGGGGTTTCCCTACATATAATTGGGAAGAAATGTCAAAGGACAACTATGGTTGGTGGAGAGCTCGATTAACACAGATGGCAAAATATTTTACAGCTTACAGGATTGATCACATATTGGGATTCTTCCGAATTTGGGAACTTCCGGATCATGCTGCGACAGGTCTTGTTGGAAAATTCCGACCATCTATTCCTCTTAGTCTGGAAGAACTTGAAAGAGAAGGAATATGGGACTTTAATCGCCTAAGTCGCCCATATATTAAGCGGGAATTATTGCAGGAAAAATTTGGTGATGCTTGGACTTTTGTTGCAACAACTTTTCTAAATGAAATTGACAAGAACTTCTATGAGTTCAAGGAGGATTGCAACACAGAGAAAAAAATAGCTTCCAAACTGAAAATTTGTGCAGAAAGTTCTCTATTGTTGGAGAGTGTAGACAAATTGAGGCACAATCTCTTTGATCTTTCACAGAATATAGTTCTAATCCGAGATTCAGAAGATCCAAGAAAATTTTATCCTCGTTTCAACCTTGAAGATACCTCAAGTTTCCAGGATTTGGATGATCATAGCAAGAATGTTCTCAAAAGATTATACAATGACTACTATTTCTGTCGTCAAGAGAATCTTTGGAGGCAAAATGCATTGAAGACCCTGCCTGTACTTCTAAATTCATCAGACATGCTAGCCTGTGGGGAAGATTTGGGCCTCATTCCATCTTGTGTCCATCCTGTTATGCAAGAACTGGGATTAGTTGGGTTGCGCATTCAGCGCATGCCCAATGAACCTGATCTGGAATTTGGTATTCCTTCTAAGTACAGCTACATGACGGTATGTGCCCCTTCATGTCATGACTGTTCCACCTTGCGTGCTTGGTGGGAAGAAGATGAAGAAAGAAGACTCAGGTTTTTCAAGAATGTGATGGAGTCCGATGAGTTGCCGCCCGATCAATGTGTTCCAGAAGTTGTACATTTTGTTCTAAGACAGCATTTTGAAGCCCCATCAATGTGGGCAATCTTCCCTCTTCAGGACTTGTTAGCATTGAAAGAAGAATATACAACACGCCCTGCAACAGAGGAGACAATCAACGACCCTACGAATCCGAAGCACTATTGGAGATACCGTGTGCATGTGACTTTGGAATCACTGATCAAAGATAATGACCTCCAAACCGCCATCAAAGATCTCGTACGTTGGAGTGGAAGATCACTCCCTAAGGAAGACGACTCAGAAGTAGAAGTGAGCCCAGTGTCGGCGTTGTCATCAGCAGAAGCTCTTTCTGAGAAGCAGCAGTTTGCCGGTACCATGGAAAAGCCTGTTCTTGTCAAATAA 2898 0.4203 MVNPGLFSANKSVNSVKVSFRIPYFTQWGQTLLVCGSVPVLGSWNVKKGVLLRPIHQGAELIWGGSITVPKGFRCQYSYYVVDDNKNVLRWEMGKKHELVLPEGIRSGHEIEFRDLWQTGSDALPFRSAFKDVIFRQCWDLSDTTVGVNHINIEPEGEAILVQFKISCPNIEKDTSIYVIGSNTKLGQWKVENGLKLSYFGESVWKSECVMQRSDFPIKYRYGKYDRCGNFSIESGPNREVSTNSSRSEAKYIFLSDGMMREIPWRGAGVAIPMFSIRSESDLGVGEFLDLKLLVDWAVATGFHLVQLLPINDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSKNIPEAIKKEIEKAKQQLDGKDVDYEATMATKLSIAKKVFAQEKDLILNSSSFKEFFSENEGWLKPYAAFCFLRDFFETSDRTQWGHFAHYSEDKLEKLVSKDSLHYEIICFHYYVQYHLHLQLSEAAEYARKKGVILKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYGWWRARLTQMAKYFTAYRIDHILGFFRIWELPDHAATGLVGKFRPSIPLSLEELEREGIWDFNRLSRPYIKRELLQEKFGDAWTFVATTFLNEIDKNFYEFKEDCNTEKKIASKLKICAESSLLLESVDKLRHNLFDLSQNIVLIRDSEDPRKFYPRFNLEDTSSFQDLDDHSKNVLKRLYNDYYFCRQENLWRQNALKTLPVLLNSSDMLACGEDLGLIPSCVHPVMQELGLVGLRIQRMPNEPDLEFGIPSKYSYMTVCAPSCHDCSTLRAWWEEDEERRLRFFKNVMESDELPPDQCVPEVVHFVLRQHFEAPSMWAIFPLQDLLALKEEYTTRPATEETINDPTNPKHYWRYRVHVTLESLIKDNDLQTAIKDLVRWSGRSLPKEDDSEVEVSPVSALSSAEALSEKQQFAGTMEKPVLVK* 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1044 965 SUPERFAMILY (Trans)glycosidases 265 918 IPR017853 -
Gso3g1044 965 SMART CBM_20_2 159 253 IPR002044 GO:2001070
Gso3g1044 965 SMART CBM_20_2 15 111 IPR002044 GO:2001070
Gso3g1044 965 Pfam Starch binding domain 16 107 IPR002044 GO:2001070
Gso3g1044 965 Pfam Starch binding domain 160 250 IPR002044 GO:2001070
Gso3g1044 965 PANTHER - 11 925 - -
Gso3g1044 965 Pfam 4-alpha-glucanotransferase 272 900 IPR003385 GO:0004134|GO:0005975
Gso3g1044 965 Gene3D Glycosidases 721 925 - -
Gso3g1044 965 Gene3D Glycosidases 265 597 - -
Gso3g1044 965 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 154 267 IPR002044 GO:2001070
Gso3g1044 965 SUPERFAMILY Starch-binding domain-like 158 247 IPR013784 GO:0030246
Gso3g1044 965 SUPERFAMILY Starch-binding domain-like 14 117 IPR013784 GO:0030246
Gso3g1044 965 Gene3D Immunoglobulins 8 119 IPR013783 -
Gso3g1044 965 Gene3D Immunoglobulins 154 256 IPR013783 -
Gso3g1044 965 CDD CBM20_DPE2_repeat1 17 117 IPR034840 GO:2001070
Gso3g1044 965 CDD CBM20_DPE2_repeat2 162 258 IPR034841 GO:2001070
Gso3g1044 965 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 10 119 IPR002044 GO:2001070
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1044 Gso-Chr3 35217403 35229509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1044 16 927 Glycoside Hydrolase AT2G40840 73.713 0.0 1446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1044 K00705 - gmx:100809128 1947.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso3g1044 3 35217403 35229509 Gso3g1044 3 35217403 35229509 ECH
Gso19g1058 19 38316096 38328836 Gso3g1044 3 35217403 35229509 GST