Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03243 ATGTCATTATTGCCTTTGGAAGATATGGTGAATCCAGGATTGTTTTCTGGGAATAAGTCCGTGAATTCGGTGAAAGTAAGCTTCCGGATACCGTATTTTACCCAATGGGGTCAGAGCTTGCTGGTGTGTGGCTCTGTTCCAGTGCTTGGTGCCTGGAATGTGAAGAGGGGTGTGTTGCTCAGTGTTGTTCATCAAGGTAGTGAGCTCATCTGGGGTGGAAGCATCACAGTGCCAAAAGGGTTCCAATGCCAGTACAGCTATTATGTTGTAGATGATAAGAAAAATGTACTGAGATGGGAGATGGGGAAGAAGCGCGAACTGATACTACCTGAAGGTGTTCAGAGTGGACAGGAGATCGAATTCCGTGATCTTTGGCAGGCTGCCTCAGATTCCCTCCCTTTCAGAAGTGCTTTCAAAGATGTCATTTTTAGGCAAAGCTGGGATTTGAGCGAAGCAACTGTAGGAGACAACCACATTAATTTTGAATCAGAAAGAGAAGCTGTCTTGGTCCAATTCAAAATTTCCTGCCCTAATGTTGAGAAAGACTCATCAATATATGTCATTGGTAGCAACACAAAGTTGGGTCAGTGGAAAGCTGAAAAGGGACTAAAACTCAGCTATTTTGGCGAATCTGTCTGGAAAGCTGAATGTGTGATGCAAAGGAAGAGTGGTTCAAACCGAGAAGTTTCTACCAACTCCACAAGGAGTGATGTGAAATATATTTTTCTCTCAGATGGCATGCTGCGGGAAACACCTTGGCGTGGTGCTGGCGTAGCTATCCCTATGTTTTCTGTTAGGTCGGAATCTGATCTGGGTGTTGGAGAGTTTCTCGACCTTAAGTTGCTAGTTGACTGGGCTGTAGCATCTGGTTTCCATTTAGTTCAACTTTTACCTATCAATGATACATCTGTGCATGGGATGTGGTGGGATTCTTATCCATACAGTTCACTATCGGTCTTTGCATTGCATCCATTGTACCTAAGAGTACAGGCTCTTTCCAAGAACTTACCGGAGGAGATCAAGAAAGAGATTGAAAAGGCCAAACAGCAATTAGATCAGAAGGATGTTGATTATGAAGCTACAATGGCCACTAAACTCTCAATTGCGAAGAAAGTTTTTTCTCAAGAGAAAGATTTGATACTCAATTCAAGTTCCTTCCAGCAGTTCTTTTGTGAGAATGAGGGTTGGTTGAAACCCTATGCTGCTTTCTGTTTCCTGCGAGACTTCTTTGAAACATCAGATCGTAGTCAATGGGGTCGTTTTGCTCATTATTCAGACGACAAGCTAGAAAAGCTTGTATCCAAGGACAGCCTGCACTATGAGATAATTTGCTTCCACTACTATGTTCAATATCATTTACATTTACAATTATCAGAAGCTGCAGCGTATGCGAGAAAGAAGGGAGTGATATTAAAGGGAGACCTTCCTATTGGAGTTGACAAAAATAGTGTGGACACCTGGGTTTATCCAAATTTGTTTCGAATGAATACTTCTACCGGAGCACCTCCAGATTATTTTGATAAAAATGGCCAGAATTGGGGTTTCCCTACTTATAATTGGGAAGAAATGTCAAAGGACAACTATGGCTGGTGGCGAGCTCGATTGACGCAGATGGCAAAATATTTTACGGCTTACAGGATTGATCACATATTGGGATTCTTTCGTATATGGGAACTTCCGGATCATGCTGTGACAGGTCTAGTTGGAAAATTCCGGCCATCTATACCTCTTAGTCAGGAAGAACTTGAAAGAGAAGGCATATGGGACTTTAATCGCTTGAGTCGCCCATATATTAAGCGGGAACTATTAGAGGAAAAATTTGGAGCTGCTTGGACATTTGTTGCAACAACTTTTCTCAATGAATTTGACAAGAACTTCTATGAGTTCAAGGAGGATAGCAACACAGAGAAAAAAATTGCTTCCAAACTGAAAACTTGTTCAGAAAGTTCTGTATTGTTGGAGAGTGAAGAGAAACTGCGGCGCAATCTCTTTGATCTTTCACAGTGCTACATTATGTTCTACGCTATTGGCTTGCAGAATATAGTTTTAATCCTTGATCCAGAGAATCCAAGAAAATTTTATCCTCGTTTCAACCTTGAAGATACCTCAAGTTTCCAGGATTTGGATGATCATAGCAAGAATGTTCTTAAAAGATTATACAATGACTACTATTTCTGTCGTCAAGAGAATCTTTGGAGGCAAAATGCATTGAAGACCCTGCCTGTACTTCTAAATTCATCAGACATGCTGGCCTGTGGGGAAGATTTAGGCCTCATTCCATCTTGTGTCCATCCTGTATGTGCCCCATCATGTCATGATTGTTCTACCTTGCGTGCTTGGTGGGAAGAAGATGAAGATAGAAGACTCCGGTTTTTCAAGAATGTGATGGAGTCCGATGAACTGCCGCCAGATCAATGTGTTCCAGAAGTTGCACATTTTATTATAAGGCAACATTTTGAAGCTCCATCAATGTGGGCAATCTTCCCTCTTCAGGACTTGTTAGCATTAAAAGAAGAATATACAACACGTCCTGCAAGAGAGGAGACAATCAATGACCCTACAAATCCCAAGCACTATTGGAGATACCGTGTGCATGTGAGTTTGGAATCATTGATTAAGGATATTGACCTTCAAACCACTATCAAAGATCTTGTAAGTTGGAGTGGAAGATCACTCCCTAAGGAAGAAGCTTCAGGTGAAGATGCCAGCCCAGTGGCAGCATTTTCAGTAGCAGAAGCTGTTACTGTGTTGTCAGTAGCAGAAGCTGTTTCTGAGAAACAGAAGTTTTCCAGTACCACGGAAAAGCCTGTTCTTGTCAAATAG 2823 0.4183 MSLLPLEDMVNPGLFSGNKSVNSVKVSFRIPYFTQWGQSLLVCGSVPVLGAWNVKRGVLLSVVHQGSELIWGGSITVPKGFQCQYSYYVVDDKKNVLRWEMGKKRELILPEGVQSGQEIEFRDLWQAASDSLPFRSAFKDVIFRQSWDLSEATVGDNHINFESEREAVLVQFKISCPNVEKDSSIYVIGSNTKLGQWKAEKGLKLSYFGESVWKAECVMQRKSGSNREVSTNSTRSDVKYIFLSDGMLRETPWRGAGVAIPMFSVRSESDLGVGEFLDLKLLVDWAVASGFHLVQLLPINDTSVHGMWWDSYPYSSLSVFALHPLYLRVQALSKNLPEEIKKEIEKAKQQLDQKDVDYEATMATKLSIAKKVFSQEKDLILNSSSFQQFFCENEGWLKPYAAFCFLRDFFETSDRSQWGRFAHYSDDKLEKLVSKDSLHYEIICFHYYVQYHLHLQLSEAAAYARKKGVILKGDLPIGVDKNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYGWWRARLTQMAKYFTAYRIDHILGFFRIWELPDHAVTGLVGKFRPSIPLSQEELEREGIWDFNRLSRPYIKRELLEEKFGAAWTFVATTFLNEFDKNFYEFKEDSNTEKKIASKLKTCSESSVLLESEEKLRRNLFDLSQCYIMFYAIGLQNIVLILDPENPRKFYPRFNLEDTSSFQDLDDHSKNVLKRLYNDYYFCRQENLWRQNALKTLPVLLNSSDMLACGEDLGLIPSCVHPVCAPSCHDCSTLRAWWEEDEDRRLRFFKNVMESDELPPDQCVPEVAHFIIRQHFEAPSMWAIFPLQDLLALKEEYTTRPAREETINDPTNPKHYWRYRVHVSLESLIKDIDLQTTIKDLVSWSGRSLPKEEASGEDASPVAAFSVAEAVTVLSVAEAVSEKQKFSSTTEKPVLVK 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03243 940 PANTHER - 21 891 - -
Vimu6g03243 940 Gene3D Glycosidases 256 584 - -
Vimu6g03243 940 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 162 287 IPR002044 GO:2001070
Vimu6g03243 940 Gene3D Immunoglobulins 16 127 IPR013783 -
Vimu6g03243 940 SUPERFAMILY (Trans)glycosidases 253 884 IPR017853 -
Vimu6g03243 940 Gene3D Glycosidases 725 890 - -
Vimu6g03243 940 SUPERFAMILY Starch-binding domain-like 22 125 IPR013784 GO:0030246
Vimu6g03243 940 SMART CBM_20_2 167 241 IPR002044 GO:2001070
Vimu6g03243 940 SMART CBM_20_2 23 119 IPR002044 GO:2001070
Vimu6g03243 940 SUPERFAMILY Starch-binding domain-like 167 223 IPR013784 GO:0030246
Vimu6g03243 940 Gene3D Immunoglobulins 165 255 IPR013783 -
Vimu6g03243 940 Pfam 4-alpha-glucanotransferase 260 766 IPR003385 GO:0004134|GO:0005975
Vimu6g03243 940 CDD CBM20_DPE2_repeat1 25 125 IPR034840 GO:2001070
Vimu6g03243 940 Pfam Starch binding domain 168 217 IPR002044 GO:2001070
Vimu6g03243 940 Pfam Starch binding domain 24 116 IPR002044 GO:2001070
Vimu6g03243 940 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 18 127 IPR002044 GO:2001070
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03243 24 915 Glycoside Hydrolase AT2G40840 67.407 0.0 1337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03243 K00705 - gmx:100793021 1678.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03243 6 29037038 29048629 Vimu6g03243 6 29037038 29048629 ECH